EY758157 | Citrus Genome Database

Overview


Name	EY758157
Unique Name	EY758157
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	937

Libraries


Library Name	Type
Sweet orange leaf, field plant B	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.002e-30
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1

Query:  532 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVRKSRMEGWAM 747
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKV++ +    AM
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 72

HSP 2 Score: 24.2534 bits (51), Expect = 4.002e-30
Identity = 10/28 (35.71%), Postives = 13/28 (46.43%), Query Frame = 2

Query:  788 QGTXRELGRPLGRPCQQHAWAYAPNLSP 871
            +G    L   L  P   +AW+YA N  P
Sbjct:   87 KGPLENLADHLADPVNNNAWSYATNFVP 114

HSP 3 Score: 74.3294 bits (181), Expect = 1.098e-12
Identity = 39/66 (59.09%), Postives = 42/66 (63.64%), Query Frame = 3

Query:  642 PIVPRWQL*SIGFG**PGGFC*AQGKEIKNGRLGYVSMFGFXRQAIVTGKGPXENLADHLXDPVNN 839
            P+ P      +G    P  F   + KEIKNGRL   SMFGF  QAIVTGKGP ENLADHL DPVNN
Sbjct:   38 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103

[Close]

BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.874e-28
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1

Query:  532 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVRKSRMEGWAM 747
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKV++ +    AM
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 223

HSP 2 Score: 73.559 bits (179), Expect = 1.874e-12
Identity = 38/66 (57.58%), Postives = 42/66 (63.64%), Query Frame = 3

Query:  642 PIVPRWQL*SIGFG**PGGFC*AQGKEIKNGRLGYVSMFGFXRQAIVTGKGPXENLADHLXDPVNN 839
            P+ P      +G    P  F   + KEIKNGRL   SMFGF  QAIVTGKGP ENLADH+ DPVNN
Sbjct:  189 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254

[Close]

BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.874e-28
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1

Query:  532 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVRKSRMEGWAM 747
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKV++ +    AM
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 223

HSP 2 Score: 73.559 bits (179), Expect = 1.874e-12
Identity = 38/66 (57.58%), Postives = 42/66 (63.64%), Query Frame = 3

Query:  642 PIVPRWQL*SIGFG**PGGFC*AQGKEIKNGRLGYVSMFGFXRQAIVTGKGPXENLADHLXDPVNN 839
            P+ P      +G    P  F   + KEIKNGRL   SMFGF  QAIVTGKGP ENLADH+ DPVNN
Sbjct:  189 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254

[Close]

BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.874e-28
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1

Query:  532 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVRKSRMEGWAM 747
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKV++ +    AM
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 221

HSP 2 Score: 74.3294 bits (181), Expect = 1.098e-12
Identity = 39/66 (59.09%), Postives = 42/66 (63.64%), Query Frame = 3

Query:  642 PIVPRWQL*SIGFG**PGGFC*AQGKEIKNGRLGYVSMFGFXRQAIVTGKGPXENLADHLXDPVNN 839
            P+ P      +G    P  F   + KEIKNGRL   SMFGF  QAIVTGKGP ENLADHL DPVNN
Sbjct:  187 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252

[Close]

BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.874e-28
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 1

Query:  532 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVRKSRMEGWAM 747
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKV++ +    AM
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 221

HSP 2 Score: 74.3294 bits (181), Expect = 1.098e-12
Identity = 39/66 (59.09%), Postives = 42/66 (63.64%), Query Frame = 3

Query:  642 PIVPRWQL*SIGFG**PGGFC*AQGKEIKNGRLGYVSMFGFXRQAIVTGKGPXENLADHLXDPVNN 839
            P+ P      +G    P  F   + KEIKNGRL   SMFGF  QAIVTGKGP ENLADHL DPVNN
Sbjct:  187 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252

[Close]

BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.993e-26
Identity = 60/80 (75.00%), Postives = 66/80 (82.50%), Query Frame = 1

Query:  511 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVRKSRMEGWAM 747
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKV++ +    AM
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAM 80

HSP 2 Score: 72.0182 bits (175), Expect = 5.451e-12
Identity = 36/50 (72.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:  690 PGGFC*AQGKEIKNGRLGYVSMFGFXRQAIVTGKGPXENLADHLXDPVNN 839
            P  F   + KEIKNGRL   SMFGF  QAIVTGKGP ENLADHL DPVNN
Sbjct:   62 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111

[Close]

BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.168e-21
Identity = 55/152 (36.18%), Postives = 74/152 (48.68%), Query Frame = 1

Query:  268 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELK 714
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG     GE+ D  YPG  FDPL L  D    AE+K
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTDYTRAAEVK 316

HSP 2 Score: 39.2762 bits (90), Expect = 7.168e-21
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 3

Query:  720 EIKNGRLGYVSMFGFXRQAIVTGKGPXENLADHLXDPV 833
            E+KNGRL   ++ G   Q + TG+ P  NL+ HL +P+
Sbjct:  314 EVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPI 351

HSP 3 Score: 71.2478 bits (173), Expect = 1.374e-18
Identity = 52/148 (35.14%), Postives = 73/148 (49.32%), Query Frame = 1

Query:  280 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELK 714
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A                          I   +V +  A  G + +A G + E +DP  +YPG  FDPL L  D    AE+K
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTDYTKEAEIK 128

HSP 4 Score: 40.817 bits (94), Expect = 1.374e-18
Identity = 19/38 (50.00%), Postives = 23/38 (60.53%), Query Frame = 3

Query:  720 EIKNGRLGYVSMFGFXRQAIVTGKGPXENLADHLXDPV 833
            EIKNGRL   ++ GF  Q  V G  P  NLA+HL  P+
Sbjct:  126 EIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPL 163

HSP 5 Score: 83.9593 bits (206), Expect = 1.393e-15
Identity = 63/157 (40.13%), Postives = 81/157 (51.59%), Query Frame = 1

Query:  277 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEAFAELKVRKSRMEG 738
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +    AE+K  +  M G
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTEYTKEAEIKNGRLAMNG 509

[Close]

BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.232e-20
Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 1

Query:  280 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 699
            P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+  + G+      W+ AG  Q F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA 201

HSP 2 Score: 50.0618 bits (118), Expect = 1.232e-20
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 3

Query:  708 AQGKEIKNGRLGYVSMFGFXRQAIVTGKGPXENLADHLXDPVNN 839
            A+ KE+ NGRL  ++  GF  Q  VTGKGP ENL  HL DP +N
Sbjct:  201 AKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244

[Close]

BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.527e-20
Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 1

Query:  280 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 699
            P YLTG  PGD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+    G+      W+ AG  + F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA 200

HSP 2 Score: 48.9062 bits (115), Expect = 3.527e-20
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 3

Query:  708 AQGKEIKNGRLGYVSMFGFXRQAIVTGKGPXENLADHLXDPVNN 839
            A+ KEI NGRL  ++  GF  Q  VTGKGP +NL  H+ DP +N
Sbjct:  200 AKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243

[Close]

BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.218e-19
Identity = 71/210 (33.81%), Postives = 98/210 (46.67%), Query Frame = 1

Query:  124 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVRKSRMEGWAM 747
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+++ +    AM
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAM 199

The following BLAST results are available for this feature:

BLAST of EY758157 vs. ExPASy Swiss-Prot

BLAST of EY758157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76


Match Name	E-value	Identity	Description
CB2D_SOLLC	4.002e-30	84.72	Chlorophyll a-b binding protein 1D (Fragment) OS=S...	[more]
CB2F_SOLLC	1.874e-28	84.72	Chlorophyll a-b binding protein 3B, chloroplastic ...	[more]
CB2E_SOLLC	1.874e-28	84.72	Chlorophyll a-b binding protein 3A, chloroplastic ...	[more]
CB2C_SOLLC	1.874e-28	84.72	Chlorophyll a-b binding protein 1C, chloroplastic ...	[more]
CB2A_SOLLC	1.874e-28	84.72	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB21_RAPSA	2.993e-26	75.00	Chlorophyll a-b binding of LHCII type 1 protein (F...	[more]
LH18_EUGGR	7.168e-21	36.18	Light-harvesting complex I LH38 proteins (Fragment...	[more]
CB24_ARATH	1.232e-20	34.72	Chlorophyll a-b binding protein 4, chloroplastic O...	[more]
CB24_PEA	3.527e-20	34.72	Chlorophyll a-b binding protein P4, chloroplastic ...	[more]
CB121_HORVU	1.218e-19	33.81	Chlorophyll a-b binding protein 1B-21, chloroplast...	[more]

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Properties


Property Name	Value
Genbank description	CS13-C1-001-040-G11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY758157 ID=EY758157; Name=EY758157; organism=Citrus sinensis; type=EST; length=937bp
TTTCCAAGACCGACCCACGCGCCCGGNTTCTCCCTCGTCACAGCTTTTCT
TGCTAACCCCGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAA
CAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCT
TCAGGCAATGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGG
GAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCA
AGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAG
TTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGA
AACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCA
TGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGA
GTCAAGTTCGGTGAGGCCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAG
CGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGA
GCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAG
GGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTA
CCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTT
TTGCTGAGCTCAAGGTAAGGAAATCAAGAATGGAAGGTTGGGCTATGTCT
CCATGTTTGGTTTCTTNCGTCAGGCCATTGTCACCGGCAAGGGACCGNTA
GAGAACTTGGCCGACCACTTGGNCGACCCTGTCAACAACATGCCTGGGCC
TACGCACCCAACTTGTCCCCGGAAGTGAGCTTCGTTGATACATTAGTAGC
GTGGAAATTGGAATGAGATGATTGGTTATGATTGACT