EY758157

Overview
NameEY758157
Unique NameEY758157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.758e-18
Identity = 60/153 (39.22%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  271 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVRK 723
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKV++
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKE 192          
BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.000e-18
Identity = 58/164 (35.37%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  277 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVRKSRMEGWAM 747
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ ++ +    AM
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAM 230          
BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.331e-17
Identity = 49/79 (62.03%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  532 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVRKSRMEGWAMSPCL 759
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKV++ +    AMS  L
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGML 82          
BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.649e-17
Identity = 65/191 (34.03%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  199 GSKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVRKSRMEGWAM 747
            GS+SV+  +     DR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ ++ +    AM
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAM 230          
BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.221e-11
Identity = 66/196 (33.67%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  235 GLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE------------VTDPLYPGGS-FDPLGLADDPEAFAELKVRKSRMEGWAM 747
            G+DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YPGG  F+PLG   D ++  ELK+++ +    AM
Sbjct:   52 GVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAM 235          
BLAST of EY758157 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.221e-11
Identity = 63/191 (32.98%), Postives = 89/191 (46.60%), Query Frame = 1
Query:  283 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVRKSRMEGWAMSPCLVSXVRPL 780
            SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R                     LG   DP YPGG  F+PLG   D ++  ELK+++ +    AM   L   ++ L
Sbjct:   64 SYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQAL 244          
The following BLAST results are available for this feature:
BLAST of EY758157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB11_SOLLC1.758e-1839.22Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC3.000e-1835.37Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB21_EUGGR4.331e-1762.03Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB12_PETHY9.649e-1734.03Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_PEA1.221e-1133.67Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC1.221e-1132.98Chlorophyll a-b binding protein 8, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-040-G11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY758157 ID=EY758157; Name=EY758157; organism=Citrus sinensis; type=EST; length=937bp
TTTCCAAGACCGACCCACGCGCCCGGNTTCTCCCTCGTCACAGCTTTTCT
TGCTAACCCCGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAA
CAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCT
TCAGGCAATGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGG
GAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCA
AGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAG
TTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGA
AACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCA
TGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGA
GTCAAGTTCGGTGAGGCCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAG
CGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGA
GCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAG
GGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTA
CCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTT
TTGCTGAGCTCAAGGTAAGGAAATCAAGAATGGAAGGTTGGGCTATGTCT
CCATGTTTGGTTTCTTNCGTCAGGCCATTGTCACCGGCAAGGGACCGNTA
GAGAACTTGGCCGACCACTTGGNCGACCCTGTCAACAACATGCCTGGGCC
TACGCACCCAACTTGTCCCCGGAAGTGAGCTTCGTTGATACATTAGTAGC
GTGGAAATTGGAATGAGATGATTGGTTATGATTGACT
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