CX300823

Overview
NameCX300823
Unique NameCX300823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300823 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.989e-15
Identity = 39/114 (34.21%), Postives = 66/114 (57.89%), Query Frame = 3 
Query:    6 VAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 347
            +A+I+       WN+FSGF I   R+ ++ RW+ +  P  W LYGL  +Q+GD    V+    TG   V+  +K+ +G+ ++FL +    ++AF+  F  I+A+++K   FQKR
Sbjct: 1310 IASILNGVISTSWNVFSGFTIPRPRMHVWLRWFTYVCPGWWGLYGLTIAQYGD----VETRLDTGETVVE-FMKNYYGYEYNFLWVVSLTLIAFSMFFVFIYAFSVKILNFQKR 1418
The following BLAST results are available for this feature:
BLAST of CX300823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB38G_ARATH2.989e-1534.21ABC transporter G family member 38 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC08002F04SK PhyRootSw1 Citrus sinensis cDNA clone C08002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300823 ID=CX300823; Name=CX300823; organism=Citrus sinensis; type=EST; length=427bp
ATAATGTGGCTGCCATTATTGCTGCTCCCTGTTATATGCTTTGGAACCTT
TTCAGCGGCTTTATGATTGCCCACAAGAGAATTCCCATTTACTGGAGATG
GTATTACTGGGCGAACCCTATAGCATGGAGTCTGTACGGCCTCCAGACTT
CACAATTTGGTGACGACGATAAACTTGTGAAGCTTTCAGATGGAACTGGC
TCGGTTCCTGTGAAGCACTTACTGAAGGATGTGTTTGGGTTTAGGCATGA
TTTCTTGGTAATAGCCGGTGCTATGGTGGTTGCTTTCGCCACCATTTTTG
CAATGATATTTGCTTATGCAATAAAAGCCTTCAAGTTCCAAAAGAGATGA
CAAGGTGAAGGTGGCTTCATTTGTATGAGAACAAAGTCGCAAGTTCATCA
GTTTCCTCGTAGAAATGAAGTTTAAGA
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