CX043950

Overview
NameCX043950
Unique NameCX043950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.911e-27
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            KA SEG LKGI+GY E+D+VS DF GDSRSSIFDAKAGIAL+  F+KLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  265 KAASEGPLKGIMGYVEEDLVSTDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.911e-27
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            K ESEGKLKGI G+TEDDVVS DF+GD+RSSIFDAKAGIALSK FVKLVSWYDNE GYSTRVVDLI H++  +
Sbjct:  265 KEESEGKLKGIPGHTEDDVVSTDFIGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHIASVE 337          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            K ESEG LKGILGY ++D+VS DF GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLI HM  T+
Sbjct:  233 KEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHMHSTK 305          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.470e-27
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = -3
Query:  331 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 540
            K ESE  LKGILGYTEDDVVS DFVGDSRSSIFDAKAGIAL+  FVK+VSWYDNEWGYS RV+DLI HM+
Sbjct:  264 KHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.465e-26
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  SEG LKGILGYTED+VVS DF+GDS SSIFDAKAGI+L+  FVKL+SWYDNE+GYSTRVVDL+VH++K
Sbjct:  261 KKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAK 331          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.465e-26
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  SEGKLKG+LGYTED VVS DF+GDSRSSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  261 KQASEGKLKGVLGYTEDAVVSSDFLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 5.490e-26
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            KA +EGKLKG+LGYTED VVS DF+GDS SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  261 KAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 7.171e-26
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            KA +EGKLKG+LGYTED VVS DF+GDS SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  261 KAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.365e-26
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            KA SEG L+G+LGYTEDDVVS DF GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RV+DLI HM K
Sbjct:  259 KAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQK 329          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.223e-25
Identity = 53/70 (75.71%), Postives = 62/70 (88.57%), Query Frame = -3
Query:  328 AESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 537
            A  EG+LKGILGYTEDD+VS D +GD+ SSIFDAKAGIAL++ F+KLVSWYDNEWGYS RVVDLI ++SK
Sbjct:  265 ASEEGELKGILGYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISK 334          
The following BLAST results are available for this feature:
BLAST of CX043950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
G3PD_MAIZE2.911e-2779.45Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY2.911e-2780.82Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU4.966e-2779.45Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR8.470e-2782.86Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI2.465e-2677.46Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P2_CANGA2.465e-2680.28Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P3_YEAST5.490e-2678.87Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P2_YEAST7.171e-2678.87Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_PANVR9.365e-2678.87Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_ASPOR1.223e-2575.71Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E02-J4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043950 ID=CX043950; Name=CX043950; organism=Citrus sinensis; type=EST; length=542bp
TTTTTTTTTTTTTTTTTAACCGCTGAAGAACAGGTCTTCGATACTAACTA
GATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTA
ACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAA
TCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGA
AACAATTTTATTTAAACTCAAACCCTCTACATAAAAACACAAACACCACA
TTTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACT
CAAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAAT
CCACCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGC
TTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACT
TGACCTACTGTCACCAACAAAGTCGGGGGATACCACATCATCCTCAGTGT
ATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGA
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