CX043950

Overview
NameCX043950
Unique NameCX043950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.266e-22
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = -3
Query:  328 KAESEG-KLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            KA SE  +LKGILGYT++DVVS DF+GD+ SSIFDAKAGI L+  FVKL+SWYDNE+GYS RVVDLIV ++K
Sbjct:  262 KAASESPELKGILGYTDEDVVSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVAK 333          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.266e-22
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  SE +LKGILGYTED VVS DF+GD+ SSIFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+  ++K
Sbjct:  260 KKASENELKGILGYTEDAVVSSDFLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAK 330          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.653e-22
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = -3
Query:  322 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 540
            KA ++G LKGIL YTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  261 KAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.653e-22
Identity = 51/71 (71.83%), Postives = 59/71 (83.10%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  SEG LKGIL YTEDD+VS D + D  SS FDAKAGIAL+K FVK++SWYDNE+GYS RVVDLIV++SK
Sbjct:  261 KEASEGPLKGILAYTEDDIVSTDILTDPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDLIVYVSK 331          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-22
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  SEG LKGILG+T++ VVS DF G + SSIFD+KAGIA+SK FVKL++WYDNEWGYS RV DL+V+ +K
Sbjct:  262 KEASEGPLKGILGFTDESVVSTDFTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDLLVYAAK 332          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  +EG L GILGYT++ VVS DF+ DSRSS+FDAKAGI L+  FVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  262 KKAAEGPLAGILGYTDEAVVSSDFLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = -3
Query:  331 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 540
            K  SEG LKG+LGYTED VVS DF+G S SSIFD KAGI LS  FVKL+SWYDNE+GYST+VVDL+ H++
Sbjct:  262 KKASEGPLKGVLGYTEDAVVSTDFLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  334 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 540
            KA ++G + GIL YTED+VVS DFVGDS SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  336 KAAAKGPMAGILAYTEDEVVSTDFVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 404          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  ++G LKG+L YT DDVVS D +G++ SSIFD KAGI+L+K FVKLVSWYDNEWGYS RV+DL+ H++K
Sbjct:  263 KKAADGPLKGVLAYTGDDVVSSDMLGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of CX043950 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.683e-22
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = -3
Query:  328 KAESEGKLKGILGYTEDDVVSPDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 540
            K  SEG L GIL YTED+VVS D  G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI ++SK
Sbjct:  262 KKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISK 332          
The following BLAST results are available for this feature:
BLAST of CX043950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
G3P_YARLI1.266e-2272.22Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P2_KLULA1.266e-2273.24Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_COLLI1.653e-2271.23Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P1_TRIKO1.653e-2271.83Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_SCHCO2.159e-2267.61Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_PICAN2.820e-2270.42Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_CANAL2.820e-2271.43Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3PT_MACFA2.820e-2272.46Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_TRIKO2.820e-2266.20Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P_NEUCR3.683e-2271.83Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E02-J4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043950 ID=CX043950; Name=CX043950; organism=Citrus sinensis; type=EST; length=542bp
TTTTTTTTTTTTTTTTTAACCGCTGAAGAACAGGTCTTCGATACTAACTA
GATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTA
ACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAA
TCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGA
AACAATTTTATTTAAACTCAAACCCTCTACATAAAAACACAAACACCACA
TTTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACT
CAAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAAT
CCACCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGC
TTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACT
TGACCTACTGTCACCAACAAAGTCGGGGGATACCACATCATCCTCAGTGT
ATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGA
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