CX300812

Overview
NameCX300812
Unique NameCX300812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NQO3_PARDE (NADH-quinone oxidoreductase chain 3 OS=Paracoccus denitrificans GN=nqo3 PE=1 SV=4)

HSP 1 Score: 156.377 bits (394), Expect = 6.142e-38
Identity = 75/146 (51.37%), Postives = 100/146 (68.49%), Query Frame = 1
Query:   67 LTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEV-DTIEKPVASCATEAK--------GGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            + ID+ ++EV   +++I++CE+AG+ VPRFCYHE LS++GNCRMC+VEV     KP ASCA + K           ++ TN+  VKKARE V+EFLL+NHPLDCPICDQ GECDLQDQ  AYG   +R+   K+  ED    P ++
Sbjct:    7 IKIDDTIIEVDPNMTLIQACEMAGIEVPRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQVKDLRPGPEGAPSEIRTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDFSRYREPKRATEDLNLGPLVE 152          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_BOVIN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus GN=NDUFS1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.021e-38
Identity = 72/145 (49.66%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   43 TLIMKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            T     I + +D   V V    +++++CE  G+ +PRFCYHE LSV+GNCRMC+VE++   K VA+CA     G ++ TN+   KKARE V+EFLL NHPLDCPICDQ GECDLQDQ   +GS ++RF   K+  ED+   P +K
Sbjct:   26 TAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKTKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIGPLVK 170          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_RAT (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Rattus norvegicus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.368e-37
Identity = 72/145 (49.66%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   43 TLIMKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            T     I + +D   V V    +++++CE  G+ +PRFCYHE LSV+GNCRMC+VE++   K VA+CA     G ++ TN+   KKARE V+EFLL NHPLDCPICDQ GECDLQDQ   +GS ++RF   K+  ED+   P +K
Sbjct:   26 TAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIGPLVK 170          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_MOUSE (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Mus musculus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.368e-37
Identity = 72/145 (49.66%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   43 TLIMKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            T     I + +D   V V    +++++CE  G+ +PRFCYHE LSV+GNCRMC+VE++   K VA+CA     G ++ TN+   KKARE V+EFLL NHPLDCPICDQ GECDLQDQ   +GS ++RF   K+  ED+   P +K
Sbjct:   26 TAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIGPLVK 170          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_PONPY (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo pygmaeus GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.048e-37
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   43 TLIMKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            T     I + +D   V V    +++++CE  G+ +PRFCYHE LSV+GNCRMC+VE++   K VA+CA     G ++ TN+   KKARE V+EFLL NHPLDCPICDQ GECDLQDQ   +G+ ++RF   K+  ED+   P +K
Sbjct:   26 TAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIGPLVK 170          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_PANTR (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pan troglodytes GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.048e-37
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   43 TLIMKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            T     I + +D   V V    +++++CE  G+ +PRFCYHE LSV+GNCRMC+VE++   K VA+CA     G ++ TN+   KKARE V+EFLL NHPLDCPICDQ GECDLQDQ   +G+ ++RF   K+  ED+   P +K
Sbjct:   26 TAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSKKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIGPLVK 170          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_MACFA (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Macaca fascicularis GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.048e-37
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   43 TLIMKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            T     I + +D   V V    +++++CE  G+ +PRFCYHE LSV+GNCRMC+VE++   K VA+CA     G ++ TN+   KKARE V+EFLL NHPLDCPICDQ GECDLQDQ   +G+ ++RF   K+  ED+   P +K
Sbjct:   26 TAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIGPLVK 170          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_HUMAN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens GN=NDUFS1 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.048e-37
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   43 TLIMKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            T     I + +D   V V    +++++CE  G+ +PRFCYHE LSV+GNCRMC+VE++   K VA+CA     G ++ TN+   KKARE V+EFLL NHPLDCPICDQ GECDLQDQ   +G+ ++RF   K+  ED+   P +K
Sbjct:   26 TAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIGPLVK 170          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_GORGO (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.048e-37
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   43 TLIMKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            T     I + +D   V V    +++++CE  G+ +PRFCYHE LSV+GNCRMC+VE++   K VA+CA     G ++ TN+   KKARE V+EFLL NHPLDCPICDQ GECDLQDQ   +G+ ++RF   K+  ED+   P +K
Sbjct:   26 TAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIGPLVK 170          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_DROME (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Drosophila melanogaster GN=ND75 PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.048e-37
Identity = 72/143 (50.35%), Postives = 99/143 (69.23%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGL----KKTKEDRLCNPFIK 477
            I + +D+I V+V    +++++    GV +PRFCYHE L+V+GNCRMC+VEV+   KPVA+CA     G  + TN+   +KARE V+EFLL+NHPLDCPICDQ GECDLQDQ  A+GS ++RF  +    K+  ED+   P +K
Sbjct:   42 IEVFVDDIPVQVVPGTTVLQAAAQIGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGWRIKTNSDLTRKAREGVMEFLLMNHPLDCPICDQGGECDLQDQAMAFGSDRSRFTDINYTGKRAVEDKDIGPLVK 184          
The following BLAST results are available for this feature:
BLAST of CX300812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NQO3_PARDE6.142e-3851.37NADH-quinone oxidoreductase chain 3 OS=Paracoccus ... [more]
NDUS1_BOVIN8.021e-3849.66NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_RAT1.368e-3749.66NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_MOUSE1.368e-3749.66NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PONPY3.048e-3748.97NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PANTR3.048e-3748.97NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_MACFA3.048e-3748.97NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_HUMAN3.048e-3748.97NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_GORGO3.048e-3748.97NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_DROME3.048e-3750.35NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]

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Properties
Property NameValue
Genbank descriptionC08002E05SK PhyRootSw1 Citrus sinensis cDNA clone C08002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300812 ID=CX300812; Name=CX300812; organism=Citrus sinensis; type=EST; length=477bp
TTCGGCACGAGGGTAAATGTCGTTATGACATGGAAATGTTTTACATTAAT
AATGAAAACAATAAACTTAACAATAGATAATATTCTTGTAGAGGTATCAG
AAAAATTATCGATTATTGAATCTTGTGAGTTAGCAGGTGTTGTAGTACCA
AGATTTTGTTATCATGAAATTTTGAGTGTTTCAGGTAACTGTCGTATGTG
TGTTGTAGAAGTAGACACTATTGAAAAACCAGTAGCATCTTGTGCAACTG
AAGCAAAAGGTGGTATGGATGTATACACAAACAATGCCTTTGTAAAAAAA
GCAAGAGAAAATGTTGTTGAATTTTTACTATTGAATCATCCACTAGATTG
TCCAATTTGTGATCAGGCAGGAGAATGTGATTTACAAGACCAAGTGAAAG
CTTATGGATCTTCACAAGCAAGATTTTTTGGCTTAAAAAAGACCAAAGAA
GATAGATTATGCAATCCTTTTATTAAA
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