CX300812

Overview
NameCX300812
Unique NameCX300812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_PONAB (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo abelii GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.513e-36
Identity = 70/145 (48.28%), Postives = 95/145 (65.52%), Query Frame = 1
Query:   43 TLIMKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            T     I + +D   V V    +++++CE  G+ +PRFCYHE LSV+GNCRMC+VE++   K VA+CA     G ++ TN+   KKARE V+E LL NHPLDCPICDQ GECDLQDQ   +G+ ++RF   K+  ED+   P +K
Sbjct:   26 TAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMELLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIGPLVK 170          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_DICDI (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Dictyostelium discoideum GN=nad11 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.240e-30
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1
Query:   61 INLTIDNILVEVSEK---LSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMD---VYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            I   I+ I  EV+E+   ++I+++C   G+ +PRFCYHE L+++GNCRMC+V V   EK +A+C        D   + T    + KARE V+EFLL+NHPLDCPICDQ GECDLQ+Q  AYG    RF+  K+  E +     IK
Sbjct:    3 IRFKINEIECEVNEEKEDITILQACTANGIEIPRFCYHEKLTIAGNCRMCLVYVTNEEKLLAACGIPLDENFDDESIETEIDEILKAREGVMEFLLINHPLDCPICDQGGECDLQEQTLAYGLDTGRFYIKKRAVEIKTFGRLIK 147          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NDUS1_DICCI (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Dictyostelium citrinum GN=nad11 PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.240e-30
Identity = 68/145 (46.90%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   61 INLTIDNILVEVSEK---LSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMD---VYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            I   I+ I  EV E+   L+I+++C   G+ +PRFCYHE L+++GNCRMC+V V   EK +A+C        D   + T    + KARE V+EFLL+NHPLDCPICDQ GECDLQ+Q  AYG    RF+  K+  E +     IK
Sbjct:    3 IRFKINEIECEVDEEKEDLTILQACTANGIEIPRFCYHEKLTIAGNCRMCLVYVTNEEKLLAACGIPLDENFDDESIETEIDEILKAREGVMEFLLINHPLDCPICDQGGECDLQEQTIAYGLDTGRFYIKKRAVEVKAFGRLIK 147          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_STRCO (NADH-quinone oxidoreductase subunit G OS=Streptomyces coelicolor GN=nuoG PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.161e-28
Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTN--NAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKE 450
            + LTID   + V +   +I + E  G+ +PRFC H +L  +G CR C+VEV+   KP+ASC      GM V T   +   +KA+  V+E LL+NHPLDCP+CD+ GEC LQ+Q  ++G S +RF G K+T E
Sbjct:   22 VTLTIDGAEISVPKGTLVIRAAEQLGIEIPRFCDHPLLDPAGACRQCIVEVEGQRKPMASCTITCTDGMVVKTQLTSPVAEKAQHGVMELLLINHPLDCPVCDKGGECPLQNQAMSHGQSDSRFEGKKRTYE 153          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_MYCTU (NADH-quinone oxidoreductase subunit G OS=Mycobacterium tuberculosis GN=nuoG PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.735e-27
Identity = 58/130 (44.62%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYT--NNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKT 444
            + LTID + + V +   +I + EL G+ +PRFC H +L   G CR C+VEV+   KP+ASC T A   M V T   +    KA+  V+E LL+NHPLDCP+CD+ GEC LQ+Q  + G + +RF   K+T
Sbjct:   17 VTLTIDGVEISVPKGTLVIRAAELMGIQIPRFCDHPLLEPVGACRQCLVEVEGQRKPLASCTTVATDDMVVRTQLTSEIADKAQHGVMELLLINHPLDCPMCDKGGECPLQNQAMSNGRTDSRFTEAKRT 146          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_MYCBO (NADH-quinone oxidoreductase subunit G OS=Mycobacterium bovis GN=nuoG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.735e-27
Identity = 58/130 (44.62%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYT--NNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKT 444
            + LTID + + V +   +I + EL G+ +PRFC H +L   G CR C+VEV+   KP+ASC T A   M V T   +    KA+  V+E LL+NHPLDCP+CD+ GEC LQ+Q  + G + +RF   K+T
Sbjct:   17 VTLTIDGVEISVPKGTLVIRAAELMGIQIPRFCDHPLLEPVGACRQCLVEVEGQRKPLASCTTVATDDMVVRTQLTSEIADKAQHGVMELLLINHPLDCPMCDKGGECPLQNQAMSNGRTDSRFTEAKRT 146          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG2_RHIME (NADH-quinone oxidoreductase subunit G 2 OS=Rhizobium meliloti GN=nuoG2 PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 6.370e-27
Identity = 53/122 (43.44%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARF 426
            I +TID   +EV    +++ + E  G+ +P FCY + L    +CRMC+VE++ + +   +CAT A  GM V TN   +++ R ++++ LL NHPLDCPICD+ GEC+LQD V AYG  ++RF
Sbjct:    2 IKVTIDEQSLEVEAGSTVLAAAERLGIEIPTFCYWKRLPPLASCRMCLVEIEGLRRLQPACATVAADGMVVRTNTPLIEETRSSMLDMLLANHPLDCPICDKGGECELQDMVMAYGPGESRF 123          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_BUCBP (NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nuoG PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.062e-21
Identity = 47/139 (33.81%), Postives = 78/139 (56.12%), Query Frame = 1
Query:   73 IDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEV-----DTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            +DN    V +  +++++C  +G+ +P FC+H +L   G+CR C V +     D + + V SC T    GM V T++   +  R+ ++E L+LNHP DCPIC++ G C LQD     G +  R+   K+T +++    FI
Sbjct:    6 VDNEEYNVDKSDNLLQACLSSGINIPYFCWHPVLGSIGSCRQCAVTIYKDLEDKVGQLVMSCMTSVLDGMIVSTSDKISRNFRKGIIELLMLNHPHDCPICEEGGSCHLQDMTVMAGHTVRRYRFTKRTHKNQYLGHFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_SHIFL (NADH-quinone oxidoreductase subunit G OS=Shigella flexneri GN=nuoG PE=3 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 3.386e-20
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEV-----DTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            M TI+  +D    EV+   +++E+C   G+ +P FC+H  L   G CR C V+      DT  + V SC T A  G  +  ++   K+ RE+VVE+L+ NHP DCP+C++ G C LQD     G S  R+   K+T  ++   PFI
Sbjct:    1 MATIH--VDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_ECOLI (NADH-quinone oxidoreductase subunit G OS=Escherichia coli (strain K12) GN=nuoG PE=1 SV=4)

HSP 1 Score: 97.4413 bits (241), Expect = 3.386e-20
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEV-----DTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            M TI+  +D    EV+   +++E+C   G+ +P FC+H  L   G CR C V+      DT  + V SC T A  G  +  ++   K+ RE+VVE+L+ NHP DCP+C++ G C LQD     G S  R+   K+T  ++   PFI
Sbjct:    1 MATIH--VDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFI 144          
The following BLAST results are available for this feature:
BLAST of CX300812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NDUS1_PONAB1.513e-3648.28NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_DICDI1.240e-3046.21NADH-ubiquinone oxidoreductase 75 kDa subunit OS=D... [more]
NDUS1_DICCI1.240e-3046.90NADH-ubiquinone oxidoreductase 75 kDa subunit OS=D... [more]
NUOG_STRCO1.161e-2844.70NADH-quinone oxidoreductase subunit G OS=Streptomy... [more]
NUOG_MYCTU3.735e-2744.62NADH-quinone oxidoreductase subunit G OS=Mycobacte... [more]
NUOG_MYCBO3.735e-2744.62NADH-quinone oxidoreductase subunit G OS=Mycobacte... [more]
NUOG2_RHIME6.370e-2743.44NADH-quinone oxidoreductase subunit G 2 OS=Rhizobi... [more]
NUOG_BUCBP3.062e-2133.81NADH-quinone oxidoreductase subunit G OS=Buchnera ... [more]
NUOG_SHIFL3.386e-2036.99NADH-quinone oxidoreductase subunit G OS=Shigella ... [more]
NUOG_ECOLI3.386e-2036.99NADH-quinone oxidoreductase subunit G OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionC08002E05SK PhyRootSw1 Citrus sinensis cDNA clone C08002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300812 ID=CX300812; Name=CX300812; organism=Citrus sinensis; type=EST; length=477bp
TTCGGCACGAGGGTAAATGTCGTTATGACATGGAAATGTTTTACATTAAT
AATGAAAACAATAAACTTAACAATAGATAATATTCTTGTAGAGGTATCAG
AAAAATTATCGATTATTGAATCTTGTGAGTTAGCAGGTGTTGTAGTACCA
AGATTTTGTTATCATGAAATTTTGAGTGTTTCAGGTAACTGTCGTATGTG
TGTTGTAGAAGTAGACACTATTGAAAAACCAGTAGCATCTTGTGCAACTG
AAGCAAAAGGTGGTATGGATGTATACACAAACAATGCCTTTGTAAAAAAA
GCAAGAGAAAATGTTGTTGAATTTTTACTATTGAATCATCCACTAGATTG
TCCAATTTGTGATCAGGCAGGAGAATGTGATTTACAAGACCAAGTGAAAG
CTTATGGATCTTCACAAGCAAGATTTTTTGGCTTAAAAAAGACCAAAGAA
GATAGATTATGCAATCCTTTTATTAAA
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