CX300812

Overview
NameCX300812
Unique NameCX300812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_ECOL6 (NADH-quinone oxidoreductase subunit G OS=Escherichia coli O6 GN=nuoG PE=3 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 3.386e-20
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEV-----DTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            M TI+  +D    EV+   +++E+C   G+ +P FC+H  L   G CR C V+      DT  + V SC T A  G  +  ++   K+ RE+VVE+L+ NHP DCP+C++ G C LQD     G S  R+   K+T  ++   PFI
Sbjct:    1 MATIH--VDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_ECO57 (NADH-quinone oxidoreductase subunit G OS=Escherichia coli O157:H7 GN=nuoG PE=3 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 3.386e-20
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEV-----DTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            M TI+  +D    EV+   +++E+C   G+ +P FC+H  L   G CR C V+      DT  + V SC T A  G  +  ++   K+ RE+VVE+L+ NHP DCP+C++ G C LQD     G S  R+   K+T  ++   PFI
Sbjct:    1 MATIH--VDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_PSEPK (NADH-quinone oxidoreductase subunit G OS=Pseudomonas putida (strain KT2440) GN=nuoG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.543e-20
Identity = 52/146 (35.62%), Postives = 81/146 (55.48%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVV-----EVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            M TI+  +D   +EV+   +++++C   G+ +P FC+H  L   G CR C V     E DT  + V SC T A  G  +  ++   K  R +VVE+L+ NHP DCP+C++ G C LQD     G ++ R+   K+T +++   PFI
Sbjct:    1 MATIH--VDGKALEVNGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDTRGRIVMSCMTPASDGTWISIDDEESKAFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQDLGPFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_SALTY (NADH-quinone oxidoreductase subunit G OS=Salmonella typhimurium GN=nuoG PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 9.851e-20
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEV-----DTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            M TI+  +D    EV+   +++++C   G+ +P FC+H  L   G CR C V+      DT  + V SC T A  G  +  ++   K+ RE+VVE+L+ NHP DCP+C++ G C LQD     G S  R+   K+T  ++   PFI
Sbjct:    1 MATIH--VDGKEYEVNGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPATDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_SALTI (NADH-quinone oxidoreductase subunit G OS=Salmonella typhi GN=nuoG PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 9.851e-20
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEV-----DTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            M TI+  +D    EV+   +++++C   G+ +P FC+H  L   G CR C V+      DT  + V SC T A  G  +  ++   K+ RE+VVE+L+ NHP DCP+C++ G C LQD     G S  R+   K+T  ++   PFI
Sbjct:    1 MATIH--VDGKEYEVNGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPATDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_YERPE (NADH-quinone oxidoreductase subunit G OS=Yersinia pestis GN=nuoG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.287e-19
Identity = 52/146 (35.62%), Postives = 81/146 (55.48%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEV-----DTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            M TI+  +D    +V+   +++++C   G+ +P FC+H  L   G CR C V+      DT  + V SC T A  G  +  +++  K  RE+VVE+L+ NHP DCP+C++ G C LQD     G S  R+   K+T +++   PFI
Sbjct:    1 MATIH--VDGKEYDVNGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNADDTRGRLVMSCMTPATDGTFISIDDSEAKAFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHQNQDLGPFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_PSEFL (NADH-quinone oxidoreductase subunit G OS=Pseudomonas fluorescens GN=nuoG PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKP-----VASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            M TI+  +D   +EV    +++++C   G+ +P FC+H  L   G CR C V+  T E       V SC T A  G  +  ++   K  R +VVE+L+ NHP DCP+C++ G C LQD     G ++ R+   K+T +++   PFI
Sbjct:    1 MATIH--VDGKELEVDGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDKRGRIVMSCMTPATDGSWISIDDEEAKVFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQDLGPFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_PSESM (NADH-quinone oxidoreductase subunit G OS=Pseudomonas syringae pv. tomato GN=nuoG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVV-----EVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            M TI+  +D   +EV    +++++C   G+ +P FC+H  L   G CR C V     E DT  + V SC T A     +   +   K  R +VVE+L+ NHP DCP+C++ G C LQD     G ++ R+   K+T +++   PFI
Sbjct:    1 MATIH--VDGKALEVDGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDTRGRIVMSCMTPATDNTWISIEDDESKAFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQELGPFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_PSEAE (NADH-quinone oxidoreductase subunit G OS=Pseudomonas aeruginosa GN=nuoG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 50/146 (34.25%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   52 MKTINLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEVDTIEKP-----VASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            M TI+  +D   +EV    +++++C   G+ +P FC+H  L   G CR C V+  T E       V SC T A     +   +   K+ R +VVE+L+ NHP DCP+C++ G C LQD     G ++ R+   K+T +++   PFI
Sbjct:    1 MATIH--VDGKTLEVDGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDKRGRLVMSCMTPATDNTWISIEDEEAKQFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQELGPFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_BUCAP (NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nuoG PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18
Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   94 VSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVV-----EVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            +SE  +++++C  +G+ +P FC+H IL   G CR C V      +D   K + SC T    G  +  N+   KK R N+VE LL NHP DCP+C++ G C LQD       +   +   K+T +++    FIK
Sbjct:   13 MSESDNLLQACLSSGLNIPYFCWHPILGSLGACRQCAVTQYNSSLDNQGKLIMSCMTPVIDGTIISINDDTSKKFRSNIVELLLTNHPHDCPVCEEGGNCHLQDMTVMTTHNFRNYRFSKRTHKNQYLGSFIK 145          
The following BLAST results are available for this feature:
BLAST of CX300812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NUOG_ECOL63.386e-2036.99NADH-quinone oxidoreductase subunit G OS=Escherich... [more]
NUOG_ECO573.386e-2036.99NADH-quinone oxidoreductase subunit G OS=Escherich... [more]
NUOG_PSEPK7.543e-2035.62NADH-quinone oxidoreductase subunit G OS=Pseudomon... [more]
NUOG_SALTY9.851e-2036.30NADH-quinone oxidoreductase subunit G OS=Salmonell... [more]
NUOG_SALTI9.851e-2036.30NADH-quinone oxidoreductase subunit G OS=Salmonell... [more]
NUOG_YERPE1.287e-1935.62NADH-quinone oxidoreductase subunit G OS=Yersinia ... [more]
NUOG_PSEFL6.385e-1934.93NADH-quinone oxidoreductase subunit G OS=Pseudomon... [more]
NUOG_PSESM8.339e-1934.93NADH-quinone oxidoreductase subunit G OS=Pseudomon... [more]
NUOG_PSEAE8.339e-1934.25NADH-quinone oxidoreductase subunit G OS=Pseudomon... [more]
NUOG_BUCAP1.089e-1835.34NADH-quinone oxidoreductase subunit G OS=Buchnera ... [more]

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Properties
Property NameValue
Genbank descriptionC08002E05SK PhyRootSw1 Citrus sinensis cDNA clone C08002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300812 ID=CX300812; Name=CX300812; organism=Citrus sinensis; type=EST; length=477bp
TTCGGCACGAGGGTAAATGTCGTTATGACATGGAAATGTTTTACATTAAT
AATGAAAACAATAAACTTAACAATAGATAATATTCTTGTAGAGGTATCAG
AAAAATTATCGATTATTGAATCTTGTGAGTTAGCAGGTGTTGTAGTACCA
AGATTTTGTTATCATGAAATTTTGAGTGTTTCAGGTAACTGTCGTATGTG
TGTTGTAGAAGTAGACACTATTGAAAAACCAGTAGCATCTTGTGCAACTG
AAGCAAAAGGTGGTATGGATGTATACACAAACAATGCCTTTGTAAAAAAA
GCAAGAGAAAATGTTGTTGAATTTTTACTATTGAATCATCCACTAGATTG
TCCAATTTGTGATCAGGCAGGAGAATGTGATTTACAAGACCAAGTGAAAG
CTTATGGATCTTCACAAGCAAGATTTTTTGGCTTAAAAAAGACCAAAGAA
GATAGATTATGCAATCCTTTTATTAAA
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