CX300812

Overview
NameCX300812
Unique NameCX300812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NQO3_THET8 (NADH-quinone oxidoreductase subunit 3 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=nqo3 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.169e-18
Identity = 51/137 (37.23%), Postives = 72/137 (52.55%), Query Frame = 1
Query:   61 INLTIDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVV---------------------EVDTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYG 408
            + + +++ +VEV    S++++   AG  VP FC  + LS  G CRMC+V                     E+    K  ASC T    GM V T +  V++A+  +VEF LLNHPLDCP CD+ G C+LQD+   YG
Sbjct:    2 VRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYG 138          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_BUCAI (NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nuoG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.060e-18
Identity = 44/140 (31.43%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   73 IDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVV-EVDTIE----KPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFIK 477
            +D+ +  V+E  +++++C   G+ +P FC+H +L   G CR C V + D  +    + + SC T    G  +   +   +  R  +VE LL NHP DCP+C++ G C LQD       S   +   K+T +++   PFIK
Sbjct:    6 VDSKIYNVNESDNLLQACLSVGINIPYFCWHPLLGSLGACRQCAVTQYDNFQDRKGRLIMSCMTPVTDGAIISIKSTESEVFRSAIVELLLTNHPHDCPVCEEGGHCHLQDMTVMVKHSMRNYRFKKRTHKNQYLGPFIK 145          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_SHEON (NADH-quinone oxidoreductase subunit G OS=Shewanella oneidensis GN=nuoG PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   73 IDNILVEVSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEV-----DTIEKPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            +D    EV    +++++C   G+ VP FC+H  L   G CR C V+      D   + V SC T +  G  +   +   K+ R+ VVE+ + NHP DCP+C++ G C LQD     G +  R+   K+T +++   PFI
Sbjct:    6 VDGKEYEVDGADNLLQACLSLGLDVPYFCWHPALGSVGACRQCAVKQYQNADDKRGRLVMSCMTPSTDGTYISIEDEEAKEFRKCVVEWQMTNHPHDCPVCEEGGACHLQDMTVMTGHNSRRYRFTKRTHQNQDLGPFI 144          
BLAST of CX300812 vs. ExPASy Swiss-Prot
Match: NUOG_BLOFL (NADH-quinone oxidoreductase subunit G OS=Blochmannia floridanus GN=nuoG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   94 VSEKLSIIESCELAGVVVPRFCYHEILSVSGNCRMCVVEV-DTIE-----------KPVASCATEAKGGMDVYTNNAFVKKARENVVEFLLLNHPLDCPICDQAGECDLQDQVKAYGSSQARFFGLKKTKEDRLCNPFI 474
            V +  +++E C   G  VP FC+H  L   G+CR C V++ D +            + V SC T     M +   +  +++ R+N++E L++NHP DCP+C++ G C LQD       +  R+   K+T  ++   PFI
Sbjct:   14 VEDTKNVLEVCLSLGFNVPYFCWHPALGSIGSCRQCAVKLYDNLHCVPDSKHINFGRLVMSCMTPVIKDMYISLFDKELQEFRKNILELLMVNHPHDCPVCEEGGNCHLQDMAVMVEHTYRRYRFTKRTHYNQYLGPFI 152          
The following BLAST results are available for this feature:
BLAST of CX300812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NQO3_THET83.169e-1837.23NADH-quinone oxidoreductase subunit 3 OS=Thermus t... [more]
NUOG_BUCAI7.060e-1831.43NADH-quinone oxidoreductase subunit G OS=Buchnera ... [more]
NUOG_SHEON5.976e-1733.09NADH-quinone oxidoreductase subunit G OS=Shewanell... [more]
NUOG_BLOFL1.923e-1530.94NADH-quinone oxidoreductase subunit G OS=Blochmann... [more]

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Properties
Property NameValue
Genbank descriptionC08002E05SK PhyRootSw1 Citrus sinensis cDNA clone C08002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300812 ID=CX300812; Name=CX300812; organism=Citrus sinensis; type=EST; length=477bp
TTCGGCACGAGGGTAAATGTCGTTATGACATGGAAATGTTTTACATTAAT
AATGAAAACAATAAACTTAACAATAGATAATATTCTTGTAGAGGTATCAG
AAAAATTATCGATTATTGAATCTTGTGAGTTAGCAGGTGTTGTAGTACCA
AGATTTTGTTATCATGAAATTTTGAGTGTTTCAGGTAACTGTCGTATGTG
TGTTGTAGAAGTAGACACTATTGAAAAACCAGTAGCATCTTGTGCAACTG
AAGCAAAAGGTGGTATGGATGTATACACAAACAATGCCTTTGTAAAAAAA
GCAAGAGAAAATGTTGTTGAATTTTTACTATTGAATCATCCACTAGATTG
TCCAATTTGTGATCAGGCAGGAGAATGTGATTTACAAGACCAAGTGAAAG
CTTATGGATCTTCACAAGCAAGATTTTTTGGCTTAAAAAAGACCAAAGAA
GATAGATTATGCAATCCTTTTATTAAA
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