CX300811

Overview
NameCX300811
Unique NameCX300811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: YR419_MIMIV (Uncharacterized short-chain type dehydrogenase/reductase R419 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R419 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 1
Query:   55 YASTKGAIHSFTKSLAKQLV------DKKIRVNCVSPGPIWTPL----IVSDK-------------EAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGGET 336
            Y++ K  IHS T+++A Q        ++ IRVNC++PGPI TPL     + DK             + +  G HG   PM R G   E++P  +F A    SSYITG  +T+ GG T
Sbjct:  222 YSACKAFIHSMTQTIATQSAKLGIEKNRSIRVNCIAPGPILTPLEIPIFLPDKKNVFEPLSNLELQQFQEIGSHG--VPMKRTGTTNEISPTVLFLADYNQSSYITGSTITIDGGYT 336          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: FABG_CUPLA (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1
Query:   25 GLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKT----PMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGGET 336
            GL G+    +Y++ K  +  FTK++A++   + I VN V+PG      I SD  ++   +  KK     P+ R GQPEEVA    F A +  SSY+TG++ T+ GG T
Sbjct:  217 GLVGNAGQANYSAAKAGVIGFTKTVAREYASRNINVNAVAPG-----FISSDMTSKLGDDINKKILETIPLGRYGQPEEVAGLVEFLAINPASSYVTGQVFTIDGGMT 319          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: FABG_AQUAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Aquifex aeolicus GN=fabG PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   25 GLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            G  G+   ++Y++TK  +  FTKSLAK+L  + + VN V+PG I T +     E E   ++ ++ P+ R G PEEVA   +F  S+  +SYITGE++ + GG
Sbjct:  147 GFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSE-EIKQKYKEQIPLGRFGSPEEVANVVLFLCSEL-ASYITGEVIHVNGG 246          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: DHB14_HUMAN (17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   25 GLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPL------IVSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            G  G  + + Y +TKGA+ + TK+LA       +RVNC+SPG IWTPL      ++ D  A    E     P+ R GQP EV  A VF AS+A  ++ TG  + + GG
Sbjct:  144 GAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRA-TIREGMLAQPLGRMGQPAEVGAAAVFLASEA--NFCTGIELLVTGG 248          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: CBR4_RAT (Carbonyl reductase family member 4 OS=Rattus norvegicus GN=Cbr4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   25 GLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKT-PMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            GL+G+     Y++TKG +  F++SLAK++  KKIRVN V+PG I T +    KE     EH KK  P+ R G+  EVA A VF     +S YITG ++ + GG
Sbjct:  137 GLKGNVGQAAYSATKGGLIGFSRSLAKEVARKKIRVNVVAPGFIHTDMTKHLKE-----EHFKKNIPLGRFGEALEVAHAVVFL---LESPYITGHVLIVDGG 231          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: YMFI_BACSU (Uncharacterized oxidoreductase ymfI OS=Bacillus subtilis GN=ymfI PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.535e-11
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   55 YASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            Y+  KGA HSF K LAK+L    IRVN V+PG + T ++     AE   E   + P+ R  +P+E+A A  F  S+  +SYITG+I+++ GG
Sbjct:  150 YSMAKGAQHSFVKGLAKELAPSGIRVNAVAPGAVDTNMMNQFTPAEKE-EIADEIPIGRLARPQEIADATAFLLSE-KASYITGQILSVNGG 239          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.535e-11
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   55 YASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLI-----VSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGGET 336
            Y+++KGAI+  TKSLA +     IRVN V+PG I TPL+      +  + E       KTPM R G+P+EV+    F    A +SYITG+I+   GG T
Sbjct:  171 YSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPA-ASYITGQIIWADGGFT 268          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: CBR4_MOUSE (Carbonyl reductase family member 4 OS=Mus musculus GN=Cbr4 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.005e-11
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   25 GLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKT-PMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            GL+G+     Y++TKG +  F++SLAK++  KKIRVN V+PG I T +    KE     EH KK  P+ R G+  EVA A VF     +S YITG ++ + GG
Sbjct:  137 GLKGNVGQSAYSATKGGLVGFSRSLAKEVARKKIRVNVVAPGFIRTDMTRHLKE-----EHFKKNIPLGRFGETLEVAHAVVFL---LESPYITGHVLIVDGG 231          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: Y182_METEA (Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   55 YASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHG--KKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            Y+ TKGA+++ +  LA +L  +KIRVN VSPG + T    +   A +  E G   +TP+ R GQP+++A    F ASD D+ ++TGE++   GG
Sbjct:  154 YSGTKGALNAISGVLANELAPRKIRVNVVSPGYVVTEGTHTAGIAGSEMEAGLVAQTPLGRSGQPDDIAGVVAFLASD-DARWVTGEVINASGG 246          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: CBR4_HUMAN (Carbonyl reductase family member 4 OS=Homo sapiens GN=CBR4 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.834e-11
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   25 GLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKT-PMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            GL+G+     Y+++KG +  F+++LAK++  KKIRVN V+PG + T +    KE     EH KK  P+ R G+  EVA A VF     +S YITG ++ + GG
Sbjct:  138 GLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDMTKDLKE-----EHLKKNIPLGRFGETIEVAHAVVFL---LESPYITGHVLVVDGG 232          
The following BLAST results are available for this feature:
BLAST of CX300811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
YR419_MIMIV9.001e-1236.75Uncharacterized short-chain type dehydrogenase/red... [more]
FABG_CUPLA9.001e-1237.043-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
FABG_AQUAE9.001e-1239.223-oxoacyl-[acyl-carrier-protein] reductase OS=Aqui... [more]
DHB14_HUMAN9.001e-1239.8117-beta-hydroxysteroid dehydrogenase 14 OS=Homo sa... [more]
CBR4_RAT9.001e-1243.69Carbonyl reductase family member 4 OS=Rattus norve... [more]
YMFI_BACSU1.535e-1142.39Uncharacterized oxidoreductase ymfI OS=Bacillus su... [more]
TRN1_DATST1.535e-1142.42Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
CBR4_MOUSE2.005e-1143.69Carbonyl reductase family member 4 OS=Mus musculus... [more]
Y182_METEA3.420e-1140.43Uncharacterized oxidoreductase MexAM1_META1p0182 O... [more]
CBR4_HUMAN5.834e-1140.78Carbonyl reductase family member 4 OS=Homo sapiens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08002E04SK PhyRootSw1 Citrus sinensis cDNA clone C08002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300811 ID=CX300811; Name=CX300811; organism=Citrus sinensis; type=EST; length=423bp
CTCGTGCCGAATTCGGCACGAGGGGGATTAGAAGGACACAAAGAACTGCT
CGACTACGCCTCCACCAAGGGAGCAATCCATTCATTCACCAAGTCATTGG
CCAAACAGTTGGTGGATAAGAAGATCCGAGTGAACTGCGTATCTCCGGGA
CCTATTTGGACTCCACTTATCGTGTCAGATAAGGAAGCAGAAAACGCCGG
TGAGCACGGTAAGAAAACTCCAATGAATCGCCCCGGCCAACCCGAGGAGG
TCGCTCCCGCTTACGTCTTTTTTGCGTCTGACGCTGACTCTTCTTATATT
ACTGGTGAAATCATGACTCTTCTTGGTGGAGAAACTCGCGCTGTTTAAAT
TGATAATTGTACTATTCCTTTTACATAAATGATGTTCGGGAATAATATAT
TTTACTTCACTTTTAAAAAAAAA
back to top