CX300811

Overview
NameCX300811
Unique NameCX300811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: FABG_CHLPN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia pneumoniae GN=fabG PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.619e-11
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   52 DYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGGET 336
            +YA+ K  I +FTKSLAK++  + IRVNC++PG I T +  S        E  K  P+ R G PE+VA   +F AS   SSY+T + + + GG T
Sbjct:  155 NYAAAKAGIIAFTKSLAKEVAARNIRVNCLAPGFIETDM-TSVLNDNLKAEWLKSIPLGRAGTPEDVARVALFLASQL-SSYMTAQTLVVDGGLT 247          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: CBR4_DANRE (Carbonyl reductase family member 4 OS=Danio rerio GN=cbr4 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.619e-11
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   25 GLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHGKKT-PMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            G++G+     Y+++K  +  FT+SLAK++  + IRVN V+PG     LI +D  A  A E   +T P+ R G+P EVA A +F     +S YITG+I+ + GG
Sbjct:  138 GVKGNAGQCVYSASKAGLEGFTRSLAKEVASRNIRVNLVAPG-----LIHTDMTAGLAEEAAVRTIPLGRFGEPAEVAQAMLFL---LESPYITGQILLVDGG 232          
BLAST of CX300811 vs. ExPASy Swiss-Prot
Match: Y4VI_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4vI OS=Rhizobium sp. (strain NGR234) GN=NGR_a01150 PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 42/115 (36.52%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 LVPNSARGGLEGHKELLDYASTKGAIHSFTKSLAKQLVDKKIRVNCVSPGPIWTPLIVSDKEAENAGEHG-----KKTPMNRPGQPEEVAPAYVFFASDADSSYITGEIMTLLGG 330
            +V  ++  GL G+ +   YA++K  + S TKSLA +   + IRV  V+PG + TP++    E E AG+       ++ P+ R  +P+E+A A  F AS A +SYITG  + + GG
Sbjct:  136 IVNVASLAGLLGNPKRSAYAASKAGLISITKSLACRWASRGIRVTAVAPGHVRTPMVA---ELERAGKLDVSAIRRRVPLGRIARPDEIARAVRFLAS-AQASYITGSTLVVDGG 246          
The following BLAST results are available for this feature:
BLAST of CX300811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
FABG_CHLPN7.619e-1142.113-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
CBR4_DANRE7.619e-1139.81Carbonyl reductase family member 4 OS=Danio rerio ... [more]
Y4VI_RHISN9.951e-1136.52Uncharacterized short-chain type dehydrogenase/red... [more]

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Properties
Property NameValue
Genbank descriptionC08002E04SK PhyRootSw1 Citrus sinensis cDNA clone C08002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300811 ID=CX300811; Name=CX300811; organism=Citrus sinensis; type=EST; length=423bp
CTCGTGCCGAATTCGGCACGAGGGGGATTAGAAGGACACAAAGAACTGCT
CGACTACGCCTCCACCAAGGGAGCAATCCATTCATTCACCAAGTCATTGG
CCAAACAGTTGGTGGATAAGAAGATCCGAGTGAACTGCGTATCTCCGGGA
CCTATTTGGACTCCACTTATCGTGTCAGATAAGGAAGCAGAAAACGCCGG
TGAGCACGGTAAGAAAACTCCAATGAATCGCCCCGGCCAACCCGAGGAGG
TCGCTCCCGCTTACGTCTTTTTTGCGTCTGACGCTGACTCTTCTTATATT
ACTGGTGAAATCATGACTCTTCTTGGTGGAGAAACTCGCGCTGTTTAAAT
TGATAATTGTACTATTCCTTTTACATAAATGATGTTCGGGAATAATATAT
TTTACTTCACTTTTAAAAAAAAA
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