CX300809

Overview
NameCX300809
Unique NameCX300809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.290e-55
Identity = 101/139 (72.66%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            P CVHLVS EKE +SSEALEA+RI+CNKY+VK AGKD FH+R+RVHP+HVLRINKMLSCAGADR+Q+GMRGAFGK  G  ARV IGQ+LLSVRCK +   H  EALRRAK+KFPGRQKI++S+ WGFTKF + +Y KL+
Sbjct:   47 PFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLR 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.290e-55
Identity = 101/139 (72.66%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            P CVHLVS EKE +SSEALEA+RI+CNKY+VK AGKD FH+R+RVHP+HVLRINKMLSCAGADR+Q+GMRGAFGK  G  ARV IGQ+LLSVRCK +   H  EALRRAK+KFPGRQKI++S+ WGFTKF + D+ KL+
Sbjct:   47 PFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLR 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.900e-55
Identity = 100/139 (71.94%), Postives = 118/139 (84.89%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            P CVHLVS EKE +SSEALEA RI+CNKY+VKFAGKD FH+RVRVHP+HVLR NKMLSCAGADR+Q+GMRGAFGKPQG  ARV IGQ+LLSVR + +   H  EALRRAK+KFPGR+KI++++ WGFTK+ + DY K K
Sbjct:   47 PFCVHLVSWEKENVSSEALEAGRIACNKYMVKFAGKDGFHLRVRVHPFHVLRSNKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWK 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 7.076e-54
Identity = 99/140 (70.71%), Postives = 117/140 (83.57%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLKD 420
            P CVHLVS E EQLSSEALEA RI CNKY+VK+ GKD FH+R+R+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV IGQ ++SVR        V EALRRAK+KFPGRQKI +SK WGFTK+ +E Y++L+D
Sbjct:   47 PLCVHLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRD 186          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.022e-52
Identity = 97/140 (69.29%), Postives = 117/140 (83.57%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLKD 420
            P CVHLVS E EQLSSEALEA RI CNKY+VK  GKD FH+R+R+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV IGQ ++SVR        V EALRRAK+KFPGRQKI +SK WGFTK+ +++++KL++
Sbjct:   47 PLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLRE 186          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.883e-52
Identity = 96/139 (69.06%), Postives = 117/139 (84.17%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            PACVH++S E+E LSSEALEA+RI  NKY+VK  GKD FH+RVR HP+HV RINKMLSCAGADR+Q+GMRGA+GKPQGLVARV+IG IL S+R K+  V H  EA RRAK+KFPGRQ IV S+ WGFTK+ +EDY++++
Sbjct:   47 PACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMR 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.650e-52
Identity = 96/138 (69.57%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++ +
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENM 184          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 8.650e-52
Identity = 96/138 (69.57%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++ +
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENM 184          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 201.83 bits (512), Expect = 8.650e-52
Identity = 96/138 (69.57%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++ +
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENM 184          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10L_MACFA (60S ribosomal protein L10-like OS=Macaca fascicularis GN=RPL10L PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.650e-52
Identity = 96/138 (69.57%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            P C H+VS E EQLSSEALEA+RI  NKY+VK  G+D FHMRVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++ +
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDM 184          
The following BLAST results are available for this feature:
BLAST of CX300809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL103_ARATH1.290e-5572.6660S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL101_ARATH1.290e-5572.6660S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL10_PINTA4.900e-5571.9460S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL10_DROME7.076e-5470.7160S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10_BOMMA1.022e-5269.2960S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10_CAEEL3.883e-5269.0660S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_SHEEP8.650e-5269.5760S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_PIG8.650e-5269.5760S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_BOVIN8.650e-5269.5760S ribosomal protein L10 OS=Bos taurus GN=RPL10 P... [more]
RL10L_MACFA8.650e-5269.5760S ribosomal protein L10-like OS=Macaca fascicula... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08002E02SK PhyRootSw1 Citrus sinensis cDNA clone C08002E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300809 ID=CX300809; Name=CX300809; organism=Citrus sinensis; type=EST; length=420bp
CCCGCTTGCGTTCACTTAGTATCCTTGGAAAAAGAACAACTTTCCTCTGA
AGCTCTTGAAGCTTCTCGAATTTCTTGCAACAAGTACATCGTTAAATTTG
CCGGAAAAGACGTGTTCCACATGAGAGTCAGAGTTCACCCTTATCACGTT
TTACGTATCAACAAAATGTTATCTTGCGCAGGAGCTGATAGAGTCCAATC
TGGAATGAGAGGTGCCTTCGGAAAACCTCAAGGTCTCGTTGCTCGAGTTA
ATATTGGTCAAATTTTATTATCTGTTAGATGCAAACAATCTGCTGTTCCC
CATGTTACTGAAGCTTTACGACGAGCGAAATACAAGTTCCCTGGACGACA
AAAGATTGTCATCTCCAAGAACTGGGGCTTCACTAAATTCTTAAAGGAAG
ATTACCAAAAGTTAAAGGAC
back to top