CX300809

Overview
NameCX300809
Unique NameCX300809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 1.130e-51
Identity = 96/138 (69.57%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++ +
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDM 184          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 1.130e-51
Identity = 96/138 (69.57%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++ +
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDM 184          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.130e-51
Identity = 96/138 (69.57%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++ +
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDM 184          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_MOUSE (60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=2 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 1.130e-51
Identity = 96/138 (69.57%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++ +
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDM 184          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.130e-51
Identity = 96/138 (69.57%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++ +
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDM 184          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 201.445 bits (511), Expect = 1.130e-51
Identity = 96/138 (69.57%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++ +
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDM 184          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.475e-51
Identity = 96/136 (70.59%), Postives = 115/136 (84.56%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQ 408
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFE 182          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.475e-51
Identity = 96/136 (70.59%), Postives = 115/136 (84.56%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQ 408
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++
Sbjct:   47 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFE 182          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.517e-51
Identity = 95/138 (68.84%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            P C H+VS E EQLSSEALEA+RI  NKY+VK  GKD FH+RVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV++GQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  + ++++
Sbjct:   42 PLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEM 179          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 1.249e-50
Identity = 91/135 (67.41%), Postives = 114/135 (84.44%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDY 405
            P C+HLVS E EQ++SEALEA+RI  NKY+VK  GKD FH+RVR HP+HV+RINKMLSCAGADR+Q+GMR AFGKP GLVARVNIGQIL+SVR K S+     EALRR +YKFPG+Q+I++SK WGF+++ +++Y
Sbjct:   47 PLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEY 181          
The following BLAST results are available for this feature:
BLAST of CX300809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_RAT1.130e-5169.5760S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]
RL10_PONAB1.130e-5169.5760S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10_PAPAN1.130e-5169.5760S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]
RL10_MOUSE1.130e-5169.5760S ribosomal protein L10 OS=Mus musculus GN=Rpl10... [more]
RL10_MACFA1.130e-5169.5760S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10_HUMAN1.130e-5169.5760S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]
RL10L_MOUSE1.475e-5170.5960S ribosomal protein L10-like OS=Mus musculus GN=... [more]
RL10L_BOVIN1.475e-5170.5960S ribosomal protein L10-like OS=Bos taurus GN=RP... [more]
RL10_CHICK2.517e-5168.8460S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]
RL10A_SCHPO1.249e-5067.4160S ribosomal protein L10-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC08002E02SK PhyRootSw1 Citrus sinensis cDNA clone C08002E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300809 ID=CX300809; Name=CX300809; organism=Citrus sinensis; type=EST; length=420bp
CCCGCTTGCGTTCACTTAGTATCCTTGGAAAAAGAACAACTTTCCTCTGA
AGCTCTTGAAGCTTCTCGAATTTCTTGCAACAAGTACATCGTTAAATTTG
CCGGAAAAGACGTGTTCCACATGAGAGTCAGAGTTCACCCTTATCACGTT
TTACGTATCAACAAAATGTTATCTTGCGCAGGAGCTGATAGAGTCCAATC
TGGAATGAGAGGTGCCTTCGGAAAACCTCAAGGTCTCGTTGCTCGAGTTA
ATATTGGTCAAATTTTATTATCTGTTAGATGCAAACAATCTGCTGTTCCC
CATGTTACTGAAGCTTTACGACGAGCGAAATACAAGTTCCCTGGACGACA
AAAGATTGTCATCTCCAAGAACTGGGGCTTCACTAAATTCTTAAAGGAAG
ATTACCAAAAGTTAAAGGAC
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