CX300809

Overview
NameCX300809
Unique NameCX300809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.631e-50
Identity = 90/135 (66.67%), Postives = 114/135 (84.44%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDY 405
            P C+HLVS E EQ++SEALEA+RI  NKY+VK  GKD FH+RVR HP+HV+RINKMLSCAGADR+Q+GMR AFGKP GLVARVNIGQ+L+SVR K S+     EALRR +YKFPG+Q+I++SK WGF+++ +++Y
Sbjct:   47 PLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEY 181          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 2.130e-50
Identity = 94/134 (70.15%), Postives = 114/134 (85.07%), Query Frame = 1
Query:   13 HLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKL 414
            H+VS E EQLSSEALEA+RI  NKY+VK  G+D FHMRVR+HP+HV+RINKMLSCAGADR+Q+GMRGAFGKPQG VARV+IGQ+++S+R K     HV EALRRAK+KFPGRQKI ISK WGFTKF  ++++ +
Sbjct:   51 HMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDM 184          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.199e-50
Identity = 94/140 (67.14%), Postives = 112/140 (80.00%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLKD 420
            P CVHLVS E EQLSSEALEA+RI  NKY+   +G+D FH+RVRVHP+HVLRINKMLSCAGADR+Q GMRGA+GKP GL ARV+IGQI+ SVR K S    V E LRRA+YKFPG+QKI++SK WGFT   + +Y K ++
Sbjct:   47 PLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKRE 186          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.520e-45
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLKD 420
            P   HL+S+E+EQ+ SEALEA+RI+ NKY++K AGK+ +H+RVRVHP+HV RINKMLSCAGADR+Q GMRGAFGKP GL ARV IGQ L+S+R K      V  AL+RA YKF GRQ I  S  WGFT+   E+Y K K+
Sbjct:   47 PLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKE 186          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.620e-43
Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLKD 420
            P  V+ +S E+E LS+EALEA+RI  NKY+VK AGKD FH+R+RV+P+HVLRINKMLSCAGADR+Q+GMRG+FGKP G  ARV   Q +LS+R K+S      EALRRAK KFPG QKI +S  +GFT    +++ KL +
Sbjct:   47 PLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFTNMFSDEFNKLNE 186          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.135e-42
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 1
Query:  100 AGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            AGKD FH+RVRVHP+HVLRINKMLSCAGADR+Q+GMRGAFGKPQG+ ARV IGQ+LLSVRCK     H  EALRRAK+KFP RQKI++S+ WGFTKF + DY K K
Sbjct:    9 AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYK 114          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.242e-26
Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = 1
Query:   10 VHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISK 369
            V LV+ E+ Q++  ALEA+R++ N+Y+ K  G+  +H+++RV+P+HVLR N + + AGADRVQ GMR AFGKP G  ARV  GQ +++VR       H  EALRRA  KFP    IV+ K
Sbjct:   47 VSLVARERAQVTHNALEAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDK 166          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 59/116 (50.86%), Postives = 77/116 (66.38%), Query Frame = 1
Query:   16 LVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVI 363
            LV LE  Q+   ALEA+RI+ NKY+    G   F+ R+RV+P+HV+R NKM++ AGADR+Q GMR AFGKP G  ARV  G ++L V  ++    +V EALRR   KFP   +IVI
Sbjct:   51 LVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSRIVI 166          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.008e-24
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   16 LVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIV 360
            LV +E  Q+   ALEA+R+  NKY+    G   + +++RV+P+HVLR NKM++ AGADR+Q GMR AFGKP G  ARV  G I++ VR ++  V H  EALRRA  K P   +IV
Sbjct:   49 LVMIEAGQIRHNALEAARVMANKYLSSTVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGKPIGTAARVYPGTIVMEVRVRKEHVEHAKEALRRAASKLPLPARIV 163          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.630e-24
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   16 LVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVI 363
            LV  E+ Q+  +ALEA+R   +KY+ K+ G   +++R+ V P+HVLR N+ML+ AGADR+Q GMR AFG P G  ARV  GQ+L     K   +PH+ EALRRA  K P   +IVI
Sbjct:   53 LVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVLFYAEFKPEHLPHIKEALRRAASKLPLPTRIVI 168          
The following BLAST results are available for this feature:
BLAST of CX300809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10B_SCHPO1.631e-5066.6760S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10L_HUMAN2.130e-5070.1560S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_YEAST6.199e-5067.1460S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR3.520e-4562.1460S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_ENCCU5.620e-4360.0060S ribosomal protein L10 OS=Encephalitozoon cunic... [more]
RL10_TOBAC2.135e-4274.5360S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_METKA6.242e-2649.1750S ribosomal protein L10e OS=Methanopyrus kandler... [more]
RL10_AERPE1.537e-2450.8650S ribosomal protein L10e OS=Aeropyrum pernix GN=... [more]
RL10_STAMF2.008e-2449.5750S ribosomal protein L10e OS=Staphylothermus mari... [more]
RL10_PYRAE7.630e-2449.1450S ribosomal protein L10e OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionC08002E02SK PhyRootSw1 Citrus sinensis cDNA clone C08002E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300809 ID=CX300809; Name=CX300809; organism=Citrus sinensis; type=EST; length=420bp
CCCGCTTGCGTTCACTTAGTATCCTTGGAAAAAGAACAACTTTCCTCTGA
AGCTCTTGAAGCTTCTCGAATTTCTTGCAACAAGTACATCGTTAAATTTG
CCGGAAAAGACGTGTTCCACATGAGAGTCAGAGTTCACCCTTATCACGTT
TTACGTATCAACAAAATGTTATCTTGCGCAGGAGCTGATAGAGTCCAATC
TGGAATGAGAGGTGCCTTCGGAAAACCTCAAGGTCTCGTTGCTCGAGTTA
ATATTGGTCAAATTTTATTATCTGTTAGATGCAAACAATCTGCTGTTCCC
CATGTTACTGAAGCTTTACGACGAGCGAAATACAAGTTCCCTGGACGACA
AAAGATTGTCATCTCCAAGAACTGGGGCTTCACTAAATTCTTAAAGGAAG
ATTACCAAAAGTTAAAGGAC
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