CX300809

Overview
NameCX300809
Unique NameCX300809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   10 VHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFP 342
            V L + E  Q+   ALEA+R   N+Y+ K  G+  +H ++RV+P+ VLR N M +   ADR  +GMR  FGKP GL AR+   Q +LS+R  +  +    E  RRA  KFP
Sbjct:   47 VSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_HALMA (50S ribosomal protein L10e OS=Haloarcula marismortui GN=rpl10e PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 51/124 (41.13%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDV-FHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISK 369
            P  + L+  E  QL   +LEASR+S N++++K  G++  + M +R  P+ VLR NK  + AGADRV  GMR AFGK  G  ARV  G+ L +  C      HV EA RRA  K     +I + +
Sbjct:   47 PVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVER 170          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.820e-17
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   10 VHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFP 342
            V L + E  Q+   ALEA+R   N+Y+ K  G+  +H ++RV+P+ VLR N M +   ADR  +GMR  FGKP GL AR+   Q +LS+R  +  +    E  RRA  KFP
Sbjct:   47 VALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_HALSA (50S ribosomal protein L10e OS=Halobacterium salinarium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.105e-17
Identity = 48/123 (39.02%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISK 369
            P  + LV  E+ QL   +LEA+R+S N++++K  G+  + M++R  P+ ++R NK  + AGADRV  GMR AFG P G  AR+  G  L +  C+      V EA RRA  K     KI + +
Sbjct:   47 PVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_HALS3 (50S ribosomal protein L10e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.105e-17
Identity = 48/123 (39.02%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISK 369
            P  + LV  E+ QL   +LEA+R+S N++++K  G+  + M++R  P+ ++R NK  + AGADRV  GMR AFG P G  AR+  G  L +  C+      V EA RRA  K     KI + +
Sbjct:   47 PVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.296e-17
Identity = 49/111 (44.14%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   19 VSLEKEQ---LSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFP 342
            VSL  EQ   +   ALEA RI  N+Y+ K  G+  +H ++RV+P+ VLR N M +   ADR  +GMR  FGKP GL ARV   Q +L+V   +  +    EA+RRA  K P
Sbjct:   47 VSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEGHLKFALEAMRRAAMKLP 157          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_PYRAB (50S ribosomal protein L10e OS=Pyrococcus abyssi GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.034e-17
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   37 QLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFP 342
            Q+   ALEA+R   N+Y+ K  G+  +H ++RV+P+ VLR N M +   ADR  +GMR  FGKP GL AR+   Q +LS+R  +  +    E  RRA  KFP
Sbjct:   56 QIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKVLSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_HALLT (50S ribosomal protein L10e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISK 369
            P  + L   E+ Q+   +LE+SR+S N++++K  G+  + M +R  P+ V+R NK  + AGADRV  GMR AFGKP G  AR+N   I+ +  C       V EA RRA  K     +I + +
Sbjct:   47 PVQISLRVEEELQIRHGSLESSRLSANRHLIKELGEGNYKMTLRKFPHQVIRENKQATGAGADRVSDGMRQAFGKPVGTAARLNKDDIVFTAYCDVEQASVVKEAFRRAYNKLSPPCRITVDR 169          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_SULIY (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   10 VHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDV-FHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARV-NIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVI 363
            V L++ E  Q+   ALEA R    K + K  G +  F M +  +P+HVLR NKM++ AGADR+Q GMR +FG P G  AR+  +G+IL+ V+ K+  +    EAL+ A  K P R +I I
Sbjct:   47 VRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRIEI 166          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_SULIN (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   10 VHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDV-FHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARV-NIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVI 363
            V L++ E  Q+   ALEA R    K + K  G +  F M +  +P+HVLR NKM++ AGADR+Q GMR +FG P G  AR+  +G+IL+ V+ K+  +    EAL+ A  K P R +I I
Sbjct:   47 VRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRIEI 166          
The following BLAST results are available for this feature:
BLAST of CX300809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_PYRFU1.394e-1742.3450S ribosomal protein L10e OS=Pyrococcus furiosus ... [more]
RL10_HALMA1.394e-1741.1350S ribosomal protein L10e OS=Haloarcula marismort... [more]
RL10_PYRHO1.820e-1742.3450S ribosomal protein L10e OS=Pyrococcus horikoshi... [more]
RL10_HALSA3.105e-1739.0250S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_HALS33.105e-1739.0250S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_THEON5.296e-1744.1450S ribosomal protein L10e OS=Thermococcus onnurin... [more]
RL10_PYRAB9.034e-1743.1450S ribosomal protein L10e OS=Pyrococcus abyssi GN... [more]
RL10_HALLT1.541e-1638.2150S ribosomal protein L10e OS=Halorubrum lacusprof... [more]
RL10_SULIY2.013e-1642.5050S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIN2.013e-1642.5050S ribosomal protein L10e OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionC08002E02SK PhyRootSw1 Citrus sinensis cDNA clone C08002E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300809 ID=CX300809; Name=CX300809; organism=Citrus sinensis; type=EST; length=420bp
CCCGCTTGCGTTCACTTAGTATCCTTGGAAAAAGAACAACTTTCCTCTGA
AGCTCTTGAAGCTTCTCGAATTTCTTGCAACAAGTACATCGTTAAATTTG
CCGGAAAAGACGTGTTCCACATGAGAGTCAGAGTTCACCCTTATCACGTT
TTACGTATCAACAAAATGTTATCTTGCGCAGGAGCTGATAGAGTCCAATC
TGGAATGAGAGGTGCCTTCGGAAAACCTCAAGGTCTCGTTGCTCGAGTTA
ATATTGGTCAAATTTTATTATCTGTTAGATGCAAACAATCTGCTGTTCCC
CATGTTACTGAAGCTTTACGACGAGCGAAATACAAGTTCCCTGGACGACA
AAAGATTGTCATCTCCAAGAACTGGGGCTTCACTAAATTCTTAAAGGAAG
ATTACCAAAAGTTAAAGGAC
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