CX300809

Overview
NameCX300809
Unique NameCX300809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.481e-14
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:   10 VHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDV-FHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYK 336
            + L+  E+ Q+   +LEASR+S N+ ++K  G+D  + M +R  P+ V+R NK  + AGADRV  GMR AFGK  G  AR+N G+ + ++ C         +A RRA  K
Sbjct:   50 ISLIVDEEVQIRHGSLEASRLSANRRMLKELGEDGDYKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDAFRRAYNK 159
[Close]
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_NANEQ (50S ribosomal protein L10e OS=Nanoarchaeum equitans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:   16 LVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKML-SCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSV 276
            LV+ E  Q+   A+EA R+  NKY+    GK  +   +R +P+H+ R   ++   AGADR+  GMR +FG+P+G   ++  G+ LLS+
Sbjct:   58 LVAKENHQIRDNAIEAIRVMVNKYLESTLGKKRYLFIIRKYPHHIYREKPVVGGYAGADRISQGMRLSFGRPKGRAVQIYEGEKLLSI 145
The following BLAST results are available for this feature:
BLAST of CX300809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_NATPD5.481e-1440.0050S ribosomal protein L10e OS=Natronomonas pharaon... [more]
RL10_NANEQ9.675e-1137.5050S ribosomal protein L10e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionC08002E02SK PhyRootSw1 Citrus sinensis cDNA clone C08002E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300809 ID=CX300809; Name=CX300809; organism=Citrus sinensis; type=EST; length=420bp
CCCGCTTGCGTTCACTTAGTATCCTTGGAAAAAGAACAACTTTCCTCTGA
AGCTCTTGAAGCTTCTCGAATTTCTTGCAACAAGTACATCGTTAAATTTG
CCGGAAAAGACGTGTTCCACATGAGAGTCAGAGTTCACCCTTATCACGTT
TTACGTATCAACAAAATGTTATCTTGCGCAGGAGCTGATAGAGTCCAATC
TGGAATGAGAGGTGCCTTCGGAAAACCTCAAGGTCTCGTTGCTCGAGTTA
ATATTGGTCAAATTTTATTATCTGTTAGATGCAAACAATCTGCTGTTCCC
CATGTTACTGAAGCTTTACGACGAGCGAAATACAAGTTCCCTGGACGACA
AAAGATTGTCATCTCCAAGAACTGGGGCTTCACTAAATTCTTAAAGGAAG
ATTACCAAAAGTTAAAGGAC
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