CX300806

Overview
NameCX300806
Unique NameCX300806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_DIACI (60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.626e-40
Identity = 77/139 (55.40%), Postives = 109/139 (78.42%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+D+ HK+ +   R  PKS+D Y+ LLV+LY+FL+RRT+S FN+++LKRL MS++NRPP++ISKI  ++K    + ++AVIVGT+ +D R+  +PKL + AL+VT+ AR+RI+KAGG IIT DQLAL  PTG NTVL+
Sbjct:    1 MGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTVCALRVTDKARSRILKAGGEIITFDQLALRAPTGKNTVLM 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 2.898e-39
Identity = 83/140 (59.29%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+D+ H   +   R +PKSQD Y+RLLV+LY+FL+RRT+S FN+VVLKRL MSR NRPPLS+S++   +K  G+++ K AV+VGTVT+D R+LEVPKL + AL+V+  AR+RI+KAGG I+T DQLAL  P G  TVLL
Sbjct:    1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREN-KTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.785e-39
Identity = 82/140 (58.57%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+D+ H   +   R +PKSQD Y+RLLV+LY+FL+RRT+S FN+VVLKRL MSR NRPPLS+S++   +K  G+++ K AV+VGT+T+D R+LEVPKL + AL+V+  AR+RI+KAGG I+T DQLAL  P G  TVLL
Sbjct:    1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREN-KTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_LYSTE (60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.785e-39
Identity = 74/139 (53.24%), Postives = 110/139 (79.14%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDK-KIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++HK+ +   R +P+SQD Y+RLLV++Y+FL+RRT+S F+R++LKRL MSR+N PP+S++++  ++K +  K  IAV+VGT+T+D R+ E+PKL + AL++TE AR RI+KAGG IIT ++LA   PTG  TVL+
Sbjct:    1 MGIDINHKYDRKVRRTEPRSQDIYLRLLVKVYRFLARRTNSKFSRIILKRLFMSRINLPPISLARVCRFMKKESRKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGEIITFEKLAEISPTGNKTVLM 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18A_XENLA (60S ribosomal protein L18-A OS=Xenopus laevis GN=rpl18-A PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 4.943e-39
Identity = 81/139 (58.27%), Postives = 107/139 (76.98%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK-GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID+ H   +   R +PKSQD Y+RLLV+LY+FL+RRT+S+FNRVVLKRL MSR NRPPLS+S++   +K  + + K AV+VG +T D R+ ++PKL + ALK+T  AR+RI+KAGG I+T DQLAL+ P G NTVLL
Sbjct:    1 MGIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_CAEBR (60S ribosomal protein L18 OS=Caenorhabditis briggsae GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.456e-39
Identity = 82/139 (58.99%), Postives = 103/139 (74.10%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK-GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID+ HKH +   R  PKS++PY+RLL +LY FL+RRT   FN +VLKRL MSR NR PLS++K++  +K   ++KK  V + TVT+D RL EVPK+++AAL VTE ARARI+ AGG IITLDQLAL  P G NTV L
Sbjct:    1 MGIDISHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKVARVVKQAGNEKKTVVTLSTVTDDARLYEVPKISLAALHVTEGARARILAAGGEIITLDQLALRSPKGENTVFL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 81/140 (57.86%), Postives = 108/140 (77.14%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+D+ H   +   R +PKSQD Y+RLLV+LY+FL+RRT+S FN+VVLKRL MSR NRPPLS+S++   +K  G+++ K AV+VGT+T+D R+ EVPKL + AL+VT  AR+RI++AGG I+T DQLAL  P G  TVLL
Sbjct:    1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREN-KTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_HUMAN (60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 81/140 (57.86%), Postives = 108/140 (77.14%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+D+ H   +   R +PKSQD Y+RLLV+LY+FL+RRT+S FN+VVLKRL MSR NRPPLS+S++   +K  G+++ K AV+VGT+T+D R+ EVPKL + AL+VT  AR+RI++AGG I+T DQLAL  P G  TVLL
Sbjct:    1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREN-KTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_TAEAS (60S ribosomal protein L18 OS=Taenia asiatica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.878e-38
Identity = 79/139 (56.83%), Postives = 106/139 (76.26%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID+ H++K+   R +PKS D Y+RL+V+LYKFL+RRT S FN +V +RL MSR+NR PLS+S+++  +K    + KIAV++GTVTND R+ EVPKL + AL+VT  AR RI+KAGG ++T+DQLAL  P G  TVLL
Sbjct:    1 MGIDISHRNKRKVVRRNPKSGDVYLRLMVKLYKFLARRTHSKFNNIVKRRLFMSRINRAPLSLSRLTRQMKKPGREGKIAVVIGTVTNDIRMREVPKLTVCALRVTAGARTRILKAGGKVMTVDQLALKAPLGKGTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_BOVIN (60S ribosomal protein L18 OS=Bos taurus GN=RPL18 PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 3.204e-38
Identity = 81/140 (57.86%), Postives = 107/140 (76.43%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+D+ H   +   R +PKSQD Y+RLLV+LY+FL+RRT+S FN+VVLKRL MSR NRPPLS+S++   +K  G++  K AV+VGT+T+D R+ EVPKL + AL+V+  AR+RI+KAGG I+T DQLAL  P G  TVLL
Sbjct:    1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREG-KTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALDSPKGCGTVLL 139          
The following BLAST results are available for this feature:
BLAST of CX300806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_DIACI7.626e-4055.4060S ribosomal protein L18 OS=Diaphorina citri GN=R... [more]
RL18_MOUSE2.898e-3959.2960S ribosomal protein L18 OS=Mus musculus GN=Rpl18... [more]
RL18_RAT3.785e-3958.5760S ribosomal protein L18 OS=Rattus norvegicus GN=... [more]
RL18_LYSTE3.785e-3953.2460S ribosomal protein L18 OS=Lysiphlebus testaceip... [more]
RL18A_XENLA4.943e-3958.2760S ribosomal protein L18-A OS=Xenopus laevis GN=r... [more]
RL18_CAEBR6.456e-3958.9960S ribosomal protein L18 OS=Caenorhabditis briggs... [more]
RL18_MACFA1.438e-3857.8660S ribosomal protein L18 OS=Macaca fascicularis G... [more]
RL18_HUMAN1.438e-3857.8660S ribosomal protein L18 OS=Homo sapiens GN=RPL18... [more]
RL18_TAEAS1.878e-3856.8360S ribosomal protein L18 OS=Taenia asiatica GN=RP... [more]
RL18_BOVIN3.204e-3857.8660S ribosomal protein L18 OS=Bos taurus GN=RPL18 P... [more]

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Properties
Property NameValue
Genbank descriptionC08002D11SK PhyRootSw1 Citrus sinensis cDNA clone C08002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300806 ID=CX300806; Name=CX300806; organism=Citrus sinensis; type=EST; length=418bp
AATCATGGGTATCGATTTAGATCATAAGCACAAAAAAAACAAGAATAGAA
TTGACCCCAAGAGCCAAGACCCTTATGTCAGACTCTTAGTTAGATTGTAC
AAATTCTTGAGCCGAAGAACCAGCTCCAATTTCAACAGAGTTGTCTTAAA
ACGTCTTACCATGAGCAGACTTAACCGACCTCCTTTATCTATTTCTAAAA
TATCAAGTTATTTGAAAGGAAAAGATGACAAAAAAATCGCCGTTATTGTC
GGAACTGTTACTAATGATGAAAGACTTCTCGAAGTTCCCAAGTTAAATAT
TGCTGCTTTGAAAGTAACTGAATCTGCTAGAGCCAGAATTGTTAAAGCCG
GAGGTTCCATTATTACCCTCGATCAATTAGCTCTTTCTCGACCTACTGGA
GCTAACACCGTTTTACTC
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