CX300806

Overview
NameCX300806
Unique NameCX300806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18B_XENLA (60S ribosomal protein L18-B OS=Xenopus laevis GN=rpl18-B PE=2 SV=4)

HSP 1 Score: 156.762 bits (395), Expect = 3.204e-38
Identity = 79/139 (56.83%), Postives = 107/139 (76.98%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID+ H   +   R +PKSQD Y+RLLV+LY+FL+RRT+S+FNRVVLKRL MSR NRPPLS+S++   +K +  + K AV+VG +T+D R+ ++PKL + ALK+T   R+RI+K+GG I+T DQLAL+ P G NTVLL
Sbjct:    1 MGIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_ORENI (60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 78/140 (55.71%), Postives = 111/140 (79.29%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+D+ H   +  +R +PKSQD Y+RLLV+LY+FL+RR+++ FNRVVL+RL MSR NRPP+++S++   +K  G+++ KIAV+VGTVT+D R+ ++PKL I AL+VT+ AR RI+KAGG ++T DQLAL+ P G  TVLL
Sbjct:    1 MGVDIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGREN-KIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_OREMO (60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 78/140 (55.71%), Postives = 111/140 (79.29%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+D+ H   +  +R +PKSQD Y+RLLV+LY+FL+RR+++ FNRVVL+RL MSR NRPP+++S++   +K  G+++ KIAV+VGTVT+D R+ ++PKL I AL+VT+ AR RI+KAGG ++T DQLAL+ P G  TVLL
Sbjct:    1 MGVDIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGREN-KIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_CAEEL (60S ribosomal protein L18 OS=Caenorhabditis elegans GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.322e-38
Identity = 80/139 (57.55%), Postives = 102/139 (73.38%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKIS-SYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++HKH +   R  PKS++PY+RLL +LY FL+RRT   FN +VLKRL MSR NR PLS++K++ +  K  ++ K  V + TVT+D RL  VPK+++AAL VTE ARARI+ AGG IITLDQLAL  P G NTV L
Sbjct:    1 MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 1.590e-37
Identity = 75/139 (53.96%), Postives = 107/139 (76.98%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+D+ H   +  +R +PKSQD Y+RLLV+LY+FL+RR+ + FN+VVLKRL MS+ NRPPL++S++   +K +  + KIAV+VGT+T+D R+L +PKL + AL+VT  AR RI+KAGG ++T DQLA++ P G  TVLL
Sbjct:    1 MGVDIRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 82/140 (58.57%), Postives = 106/140 (75.71%), Query Frame = 2
Query:    5 MGIDL--DHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGIDL    K KK K R  PKS D Y++LLV+LY+FL RR++SNFN V+LKRL MS++N+ PLS+S++  ++ GKDD KIAV+VGT+T+D R+ E+P + + AL+ TE ARARI KAGG  +T DQLAL  P G NTVLL
Sbjct:    1 MGIDLIAGGKSKKTK-RTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDD-KIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLL 138          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 74/139 (53.24%), Postives = 108/139 (77.70%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++HK+ +   R  PKS++ Y+ LLV++Y+FL+RR+ + FNR+VLKRL MSR+N+P +S+++++ ++K    +  IAV+VGTVT+D RL +VPKL + AL+VTE ARARI+KAGG I+T DQLA+  P G  TVL+
Sbjct:    1 MGIDINHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLM 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.488e-35
Identity = 80/140 (57.14%), Postives = 104/140 (74.29%), Query Frame = 2
Query:    5 MGIDL--DHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGIDL    K KK K R  PKS D Y++L V+LY+FL RRT+S FN V+LKRL MS++N+ PLS+S++  ++ GK+D KIAV+VGT+T+D R+ E+P + + AL+ TE ARARI KAGG  +T DQLAL  P G NTVLL
Sbjct:    1 MGIDLIAGGKSKKTK-RTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKED-KIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLL 138          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 75/138 (54.35%), Postives = 100/138 (72.46%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            M ID   +  +   R    SQ+PY  LLV+LY+FL+RRT+S FN+VVLKRL  ++ NRPP+SIS+I++ +K +   KIAV VGTV +DERLL+ PKL + AL+ TE+AR+RIVKAGG  ++ DQ AL RP G NT L+
Sbjct:    1 MAIDKSKRFLRKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLI 138          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.149e-34
Identity = 76/140 (54.29%), Postives = 103/140 (73.57%), Query Frame = 2
Query:    5 MGIDLDHK-HKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID   K HK++ +R  PKS + Y++LLV+LY FL+RRT + FN+VVLK L +S++NRPP+S+S+I+  LK +    K  V+VGTVT+D R+ E PK  +AAL+ T  ARA+IVKAGG  ITLDQLA+  P G NT++L
Sbjct:    1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLIL 140          
The following BLAST results are available for this feature:
BLAST of CX300806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18B_XENLA3.204e-3856.8360S ribosomal protein L18-B OS=Xenopus laevis GN=r... [more]
RL18_ORENI4.184e-3855.7160S ribosomal protein L18 OS=Oreochromis niloticus... [more]
RL18_OREMO4.184e-3855.7160S ribosomal protein L18 OS=Oreochromis mossambic... [more]
RL18_CAEEL9.322e-3857.5560S ribosomal protein L18 OS=Caenorhabditis elegan... [more]
RL18_ICTPU1.590e-3753.9660S ribosomal protein L18 OS=Ictalurus punctatus G... [more]
RL183_ARATH6.042e-3758.5760S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL18_IXOSC1.758e-3653.2460S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]
RL182_ARATH1.488e-3557.1460S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL18_DICDI1.944e-3554.3560S ribosomal protein L18 OS=Dictyostelium discoid... [more]
RL18_YEAST2.149e-3454.2960S ribosomal protein L18 OS=Saccharomyces cerevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08002D11SK PhyRootSw1 Citrus sinensis cDNA clone C08002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300806 ID=CX300806; Name=CX300806; organism=Citrus sinensis; type=EST; length=418bp
AATCATGGGTATCGATTTAGATCATAAGCACAAAAAAAACAAGAATAGAA
TTGACCCCAAGAGCCAAGACCCTTATGTCAGACTCTTAGTTAGATTGTAC
AAATTCTTGAGCCGAAGAACCAGCTCCAATTTCAACAGAGTTGTCTTAAA
ACGTCTTACCATGAGCAGACTTAACCGACCTCCTTTATCTATTTCTAAAA
TATCAAGTTATTTGAAAGGAAAAGATGACAAAAAAATCGCCGTTATTGTC
GGAACTGTTACTAATGATGAAAGACTTCTCGAAGTTCCCAAGTTAAATAT
TGCTGCTTTGAAAGTAACTGAATCTGCTAGAGCCAGAATTGTTAAAGCCG
GAGGTTCCATTATTACCCTCGATCAATTAGCTCTTTCTCGACCTACTGGA
GCTAACACCGTTTTACTC
back to top