CX300806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18B_XENLA (60S ribosomal protein L18-B OS=Xenopus laevis GN=rpl18-B PE=2 SV=4) HSP 1 Score: 156.762 bits (395), Expect = 3.204e-38 Identity = 79/139 (56.83%), Postives = 107/139 (76.98%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MGID+ H + R +PKSQD Y+RLLV+LY+FL+RRT+S+FNRVVLKRL MSR NRPPLS+S++ +K + + K AV+VG +T+D R+ ++PKL + ALK+T R+RI+K+GG I+T DQLAL+ P G NTVLL Sbjct: 1 MGIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLL 139
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_ORENI (60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38 Identity = 78/140 (55.71%), Postives = 111/140 (79.29%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MG+D+ H + +R +PKSQD Y+RLLV+LY+FL+RR+++ FNRVVL+RL MSR NRPP+++S++ +K G+++ KIAV+VGTVT+D R+ ++PKL I AL+VT+ AR RI+KAGG ++T DQLAL+ P G TVLL Sbjct: 1 MGVDIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGREN-KIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLL 139
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_OREMO (60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38 Identity = 78/140 (55.71%), Postives = 111/140 (79.29%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MG+D+ H + +R +PKSQD Y+RLLV+LY+FL+RR+++ FNRVVL+RL MSR NRPP+++S++ +K G+++ KIAV+VGTVT+D R+ ++PKL I AL+VT+ AR RI+KAGG ++T DQLAL+ P G TVLL Sbjct: 1 MGVDIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGREN-KIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLL 139
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_CAEEL (60S ribosomal protein L18 OS=Caenorhabditis elegans GN=rpl-18 PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 9.322e-38 Identity = 80/139 (57.55%), Postives = 102/139 (73.38%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKIS-SYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MGID++HKH + R PKS++PY+RLL +LY FL+RRT FN +VLKRL MSR NR PLS++K++ + K ++ K V + TVT+D RL VPK+++AAL VTE ARARI+ AGG IITLDQLAL P G NTV L Sbjct: 1 MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFL 139
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3) HSP 1 Score: 154.451 bits (389), Expect = 1.590e-37 Identity = 75/139 (53.96%), Postives = 107/139 (76.98%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MG+D+ H + +R +PKSQD Y+RLLV+LY+FL+RR+ + FN+VVLKRL MS+ NRPPL++S++ +K + + KIAV+VGT+T+D R+L +PKL + AL+VT AR RI+KAGG ++T DQLA++ P G TVLL Sbjct: 1 MGVDIRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLL 139
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37 Identity = 82/140 (58.57%), Postives = 106/140 (75.71%), Query Frame = 2 Query: 5 MGIDL--DHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MGIDL K KK K R PKS D Y++LLV+LY+FL RR++SNFN V+LKRL MS++N+ PLS+S++ ++ GKDD KIAV+VGT+T+D R+ E+P + + AL+ TE ARARI KAGG +T DQLAL P G NTVLL Sbjct: 1 MGIDLIAGGKSKKTK-RTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDD-KIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLL 138
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36 Identity = 74/139 (53.24%), Postives = 108/139 (77.70%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MGID++HK+ + R PKS++ Y+ LLV++Y+FL+RR+ + FNR+VLKRL MSR+N+P +S+++++ ++K + IAV+VGTVT+D RL +VPKL + AL+VTE ARARI+KAGG I+T DQLA+ P G TVL+ Sbjct: 1 MGIDINHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLM 139
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2) HSP 1 Score: 147.902 bits (372), Expect = 1.488e-35 Identity = 80/140 (57.14%), Postives = 104/140 (74.29%), Query Frame = 2 Query: 5 MGIDL--DHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MGIDL K KK K R PKS D Y++L V+LY+FL RRT+S FN V+LKRL MS++N+ PLS+S++ ++ GK+D KIAV+VGT+T+D R+ E+P + + AL+ TE ARARI KAGG +T DQLAL P G NTVLL Sbjct: 1 MGIDLIAGGKSKKTK-RTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKED-KIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLL 138
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35 Identity = 75/138 (54.35%), Postives = 100/138 (72.46%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 M ID + + R SQ+PY LLV+LY+FL+RRT+S FN+VVLKRL ++ NRPP+SIS+I++ +K + KIAV VGTV +DERLL+ PKL + AL+ TE+AR+RIVKAGG ++ DQ AL RP G NT L+ Sbjct: 1 MAIDKSKRFLRKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLI 138
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 2.149e-34 Identity = 76/140 (54.29%), Postives = 103/140 (73.57%), Query Frame = 2 Query: 5 MGIDLDHK-HKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MGID K HK++ +R PKS + Y++LLV+LY FL+RRT + FN+VVLK L +S++NRPP+S+S+I+ LK + K V+VGTVT+D R+ E PK +AAL+ T ARA+IVKAGG ITLDQLA+ P G NT++L Sbjct: 1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLIL 140 The following BLAST results are available for this feature:
BLAST of CX300806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300806 ID=CX300806; Name=CX300806; organism=Citrus sinensis; type=EST; length=418bpback to top |