CX300806

Overview
NameCX300806
Unique NameCX300806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.149e-34
Identity = 77/131 (58.78%), Postives = 100/131 (76.34%), Query Frame = 2
Query:   26 KHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            K+KK K R  PKS D Y++LLV+LY+FL RRT SNFN V+LKRL MS++NRPPLS+S++  Y++GK+  KI V+VG VT+D R+ +VP + + ALK TE+ARARI KAGG  +T DQLAL  P   +TVLL
Sbjct:    7 KNKKTK-RTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEG-KIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLL 134          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 4.788e-34
Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 2
Query:    5 MGIDL--DHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPT-GANTVLL 418
            MGIDL    K KK K R +PKS D Y++LLV+  ++L RRT S FN V+LKRL MS++N+ PLS+S++  Y+ GKD  KIAVIVGTVT+D R+ +VP L + AL+ TESARARI KAGG  +T DQLAL  PT   NTVLL
Sbjct:    1 MGIDLIAGGKSKKTK-RTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDG-KIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.011e-32
Identity = 75/139 (53.96%), Postives = 100/139 (71.94%), Query Frame = 2
Query:    5 MGIDLDHKHK-KNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGIDL    + K   R    S++PY+RLLV+LYKFLSRRT  +FN+VVLKRL M R  + PLS+SK+S +++ + D   AV+VGTVTNDER+  VPKL++ AL+VTE+AR RI+ +GG ++T DQL    PTG+   LL
Sbjct:    1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLYKFLSRRTDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNT-AVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLL 138          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.719e-29
Identity = 68/139 (48.92%), Postives = 97/139 (69.78%), Query Frame = 2
Query:    5 MGIDLDHKHK-KNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGIDL    + K   R    S++PY+RLLV+L+KFL+RRT   FN++VLKRL M R  + PLS+SK+S +++ + +   AV++GTVT+DER+  VPKL++ AL+VTE+AR RI+ +GG ++T DQL    P G    LL
Sbjct:    1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLFKFLARRTDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHMESRPNNT-AVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLL 138          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.926e-28
Identity = 69/146 (47.26%), Postives = 95/146 (65.07%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKN-RIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISS-------YLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+DL    KK +  R    S +PY++LL++LYKFL +RT+S FN+++ KRL  SR NR P+S+S+I+        +LK      IAVIVG V +D R+  +P L I AL+ ++SAR RI  AGG  +T DQLA+  PTG NT+LL
Sbjct:    1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLL 146          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.926e-28
Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKN-RIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGK-------DDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+DL    KK++  R    S +PY++LL++LYKFL++RTSS FN+VV +RL  SR NR P+S+S+I+  +K K           IAV+VG V +D R+  +P + + AL+ ++SAR  IV AGG  +T DQLA+  PTG NT LL
Sbjct:    1 MGVDLTGISKKSRVIRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLL 146          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.142e-27
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKN-RIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-----DKK--IAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MG+DL    KK +  R    S +PY++LL++LYKFL++RT+S FN++V +RL  SR NR P+S+S+I+  +K K       KK  IAVIVG V +D R+  +P L + AL+ ++SAR RI  AGG  +T DQLA+  PTG NT LL
Sbjct:    1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLL 146          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 6.929e-25
Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALK 313
            MG+D+ H   +   R +PKSQD Y+RLLV+L +FL+RRT+S FN+VVLKRL MSR NRPPLS+S++   +K  G++  K AV+VGT+T+D R  EVPKL + AL+
Sbjct:    1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMXRKMKLPGREG-KTAVVVGTITDDVRFQEVPKLKVCALR 104          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 57/141 (40.43%), Postives = 91/141 (64.54%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFL-SRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGI + H   +      P S+D  + LLV++Y+   S+ +++ FN+VVL+RL MSR +RPP+S+S++   +K  G++++  AV+VGTVT+D R+ E+P L ++ALK+T   R RI+K    I+    LAL+ P    +VLL
Sbjct:    1 MGIVIQHNKDRLVRPKQPLSED--ITLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRT-AVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLL 137          
The following BLAST results are available for this feature:
BLAST of CX300806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_CICAR2.149e-3458.7860S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL181_ARATH4.788e-3458.87Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_THEPA2.011e-3253.9660S ribosomal protein L18 OS=Theileria parva GN=RP... [more]
RL18_THEAN2.719e-2948.9260S ribosomal protein L18 OS=Theileria annulata GN... [more]
RL18_TRYBB3.926e-2847.2660S ribosomal protein L18 OS=Trypanosoma brucei br... [more]
RL18_LEIMA3.926e-2846.5860S ribosomal protein L18 OS=Leishmania major GN=R... [more]
RL18_TRYCR1.142e-2747.9560S ribosomal protein L18 OS=Trypanosoma cruzi GN=... [more]
RL18_PIG6.929e-2555.2460S ribosomal protein L18 (Fragment) OS=Sus scrofa... [more]
RL18_SALSA4.810e-1840.4360S ribosomal protein L18 OS=Salmo salar GN=rpl18 ... [more]

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Properties
Property NameValue
Genbank descriptionC08002D11SK PhyRootSw1 Citrus sinensis cDNA clone C08002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300806 ID=CX300806; Name=CX300806; organism=Citrus sinensis; type=EST; length=418bp
AATCATGGGTATCGATTTAGATCATAAGCACAAAAAAAACAAGAATAGAA
TTGACCCCAAGAGCCAAGACCCTTATGTCAGACTCTTAGTTAGATTGTAC
AAATTCTTGAGCCGAAGAACCAGCTCCAATTTCAACAGAGTTGTCTTAAA
ACGTCTTACCATGAGCAGACTTAACCGACCTCCTTTATCTATTTCTAAAA
TATCAAGTTATTTGAAAGGAAAAGATGACAAAAAAATCGCCGTTATTGTC
GGAACTGTTACTAATGATGAAAGACTTCTCGAAGTTCCCAAGTTAAATAT
TGCTGCTTTGAAAGTAACTGAATCTGCTAGAGCCAGAATTGTTAAAGCCG
GAGGTTCCATTATTACCCTCGATCAATTAGCTCTTTCTCGACCTACTGGA
GCTAACACCGTTTTACTC
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