CX300806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 2.149e-34 Identity = 77/131 (58.78%), Postives = 100/131 (76.34%), Query Frame = 2 Query: 26 KHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 K+KK K R PKS D Y++LLV+LY+FL RRT SNFN V+LKRL MS++NRPPLS+S++ Y++GK+ KI V+VG VT+D R+ +VP + + ALK TE+ARARI KAGG +T DQLAL P +TVLL Sbjct: 7 KNKKTK-RTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEG-KIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLL 134
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3) HSP 1 Score: 142.895 bits (359), Expect = 4.788e-34 Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 2 Query: 5 MGIDL--DHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPT-GANTVLL 418 MGIDL K KK K R +PKS D Y++LLV+ ++L RRT S FN V+LKRL MS++N+ PLS+S++ Y+ GKD KIAVIVGTVT+D R+ +VP L + AL+ TESARARI KAGG +T DQLAL PT NTVLL Sbjct: 1 MGIDLIAGGKSKKTK-RTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDG-KIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLL 139
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 2.011e-32 Identity = 75/139 (53.96%), Postives = 100/139 (71.94%), Query Frame = 2 Query: 5 MGIDLDHKHK-KNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MGIDL + K R S++PY+RLLV+LYKFLSRRT +FN+VVLKRL M R + PLS+SK+S +++ + D AV+VGTVTNDER+ VPKL++ AL+VTE+AR RI+ +GG ++T DQL PTG+ LL Sbjct: 1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLYKFLSRRTDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNT-AVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLL 138
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 2.719e-29 Identity = 68/139 (48.92%), Postives = 97/139 (69.78%), Query Frame = 2 Query: 5 MGIDLDHKHK-KNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MGIDL + K R S++PY+RLLV+L+KFL+RRT FN++VLKRL M R + PLS+SK+S +++ + + AV++GTVT+DER+ VPKL++ AL+VTE+AR RI+ +GG ++T DQL P G LL Sbjct: 1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLFKFLARRTDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHMESRPNNT-AVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLL 138
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 3.926e-28 Identity = 69/146 (47.26%), Postives = 95/146 (65.07%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKN-RIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISS-------YLKGKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MG+DL KK + R S +PY++LL++LYKFL +RT+S FN+++ KRL SR NR P+S+S+I+ +LK IAVIVG V +D R+ +P L I AL+ ++SAR RI AGG +T DQLA+ PTG NT+LL Sbjct: 1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLL 146
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 3.926e-28 Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKN-RIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGK-------DDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MG+DL KK++ R S +PY++LL++LYKFL++RTSS FN+VV +RL SR NR P+S+S+I+ +K K IAV+VG V +D R+ +P + + AL+ ++SAR IV AGG +T DQLA+ PTG NT LL Sbjct: 1 MGVDLTGISKKSRVIRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLL 146
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.142e-27 Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKN-RIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-----DKK--IAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MG+DL KK + R S +PY++LL++LYKFL++RT+S FN++V +RL SR NR P+S+S+I+ +K K KK IAVIVG V +D R+ +P L + AL+ ++SAR RI AGG +T DQLA+ PTG NT LL Sbjct: 1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLL 146
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3) HSP 1 Score: 112.464 bits (280), Expect = 6.929e-25 Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALK 313 MG+D+ H + R +PKSQD Y+RLLV+L +FL+RRT+S FN+VVLKRL MSR NRPPLS+S++ +K G++ K AV+VGT+T+D R EVPKL + AL+ Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMXRKMKLPGREG-KTAVVVGTITDDVRFQEVPKLKVCALR 104
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18 Identity = 57/141 (40.43%), Postives = 91/141 (64.54%), Query Frame = 2 Query: 5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFL-SRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418 MGI + H + P S+D + LLV++Y+ S+ +++ FN+VVL+RL MSR +RPP+S+S++ +K G++++ AV+VGTVT+D R+ E+P L ++ALK+T R RI+K I+ LAL+ P +VLL Sbjct: 1 MGIVIQHNKDRLVRPKQPLSED--ITLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRT-AVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLL 137 The following BLAST results are available for this feature:
BLAST of CX300806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300806 ID=CX300806; Name=CX300806; organism=Citrus sinensis; type=EST; length=418bpback to top |