CX300804

Overview
NameCX300804
Unique NameCX300804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.567e-16
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMNPV+HPHGGGN QH+G P TVRRD  AG K G I+ARRTGR+RG
Sbjct:  200 RGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAARRTGRIRG 248          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = -3
Query:  227 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLR 382
            RGVAMNPV+HPHGGGN QH+G   TVRRD P G K G I+ARRTGR+RG  R
Sbjct:  200 RGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAR 251          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.960e-15
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMNPV+HPHGGGN QH+G   TVRRD P G K G I+ARRTGR+RG
Sbjct:  200 RGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLIAARRTGRLRG 248          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.960e-15
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMNPV+HPHGGGN QH+G   TVRRD P G K G I+ARRTGR+RG
Sbjct:  200 RGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRG 248          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.866e-15
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPV+HPHGGGN QH+G   T +RD PAG K G I+ARRTGR+RG+    E
Sbjct:  201 RGVAMNPVEHPHGGGNHQHVGHATTTKRDDPAGKKVGLIAARRTGRLRGTKNISE 255          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.050e-15
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMNPV+HPHGGGN QH+GK  TV+R  P G K G I+ARRTGR+RG
Sbjct:  200 RGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRG 248          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.050e-15
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMNPV+HPHGGGN QH+GK  TV+R  P G K G I+ARRTGR+RG
Sbjct:  200 RGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRG 248          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.614e-15
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = -3
Query:  221 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTD 382
            RGVAMNPV+HPHGGGN QH+GK  TV+R   AG K G I+ARRTGR+RG  +TD
Sbjct:  200 RGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGG-KTD 252          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.614e-15
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = -3
Query:  221 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTD 382
            RGVAMNPV+HPHGGGN QH+GK  TV+R   AG K G I+ARRTGR+RG  +TD
Sbjct:  200 RGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGG-KTD 252          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.614e-15
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPVDHPHGGGN QH+GK  T+ R   +G K+G I+ARRTG +RGS +T +
Sbjct:  200 RGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAARRTGLLRGSQKTQD 254          
The following BLAST results are available for this feature:
BLAST of CX300804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RL8_CAEEL4.567e-1675.5160S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL8_SOLLC1.017e-1571.1560S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL83_ARATH2.960e-1573.4760S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL81_ARATH2.960e-1573.4760S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_DICDI3.866e-1565.4560S ribosomal protein L8 OS=Dictyostelium discoide... [more]
RL8_ANOGA5.050e-1571.4360S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL5.050e-1571.4360S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_SPOFR8.614e-1568.5260S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR8.614e-1568.5260S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL2_YEAST8.614e-1563.6460S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC08002D09SK PhyRootSw1 Citrus sinensis cDNA clone C08002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300804 ID=CX300804; Name=CX300804; organism=Citrus sinensis; type=EST; length=384bp
TTCGGCACGAGGTTTTTTTTTTTTTTTTTTTTTATTATAGCATTATTGTT
AAGATTATTGGGTAAAGTCAATCAATTGTTTCGATTGCAATTTGTTTTGA
TTTTATTCAAGGGCAGTAGATGCTTTTAAGTATAACTACTACATTGGATT
TATCGAGGGTTAATTTTCATAGGGGATCTCTCACTTATTTGATATATATT
ATTTATACAATTTATACTTCATCAGTGCGTAAAGATCCTCTGACTCTTCC
AGTACGACGAGCAGAGATTTGACCAGACTTGGCACCGGCTGGCTTGTCTC
TTCTGACAGTACCTGGCTTACCCATGTGCTGTTGGTTACCACCACCGTGA
GGGTGATCAACAGGGTTCATGGCAACACCACGGA
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