CX300804

Overview
NameCX300804
Unique NameCX300804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.614e-15
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPVDHPHGGGN QH+GK  T+ R   +G K+G I+ARRTG +RGS +T +
Sbjct:  200 RGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAARRTGLLRGSQKTQD 254          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.614e-15
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPVDHPHGGGN QH+GK  T+ R   +G K+G I+ARRTG +RGS +T +
Sbjct:  200 RGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAARRTGLLRGSQKTQD 254          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.125e-14
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMNPV+HPHGGGN QH+GK  TV+R   AG K G I+ARRTGR+RG
Sbjct:  200 RGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRG 248          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.275e-14
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMNPV+HPHGGGN QH+G   TV RD P G K G I+ RRTGR+RG
Sbjct:  200 RGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQKVGLIAGRRTGRLRG 248          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.122e-13
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMN V HPHGGG+ QH+GKP TV R+ P G K G I+ARRTGR +G
Sbjct:  191 RGVAMNAVSHPHGGGSHQHVGKPSTVARETPPGRKVGHIAARRTGRRKG 239          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.173e-13
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = -3
Query:  239 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVR 382
            RGVAMN VDHPHGGGN+QH G+P T+ R  PAG K G I+A+RTG+ R
Sbjct:  194 RGVAMNAVDHPHGGGNRQHPGRPTTISRHAPAGRKVGSIAAKRTGKRR 241          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METTH (50S ribosomal protein L2P OS=Methanobacterium thermoautotrophicum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.062e-13
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = -3
Query:  239 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVR 382
            RGVAMN VDHPHGGGN+QH G+P TV R  P G K G I+ARRTG+ R
Sbjct:  194 RGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSIAARRTGKRR 241          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.796e-12
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = -3
Query:  233 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGS 382
            RGVAMNPVDHPHGGGN QH+G   TV R    G K G I+ARRTG +RG+
Sbjct:  199 RGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRGA 248          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.001e-12
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = -3
Query:  239 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVR 382
            RGVAMN VDHPHGGGN+QH G+P TV R  P G K G I+A+RTG  R
Sbjct:  194 RGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSIAAKRTGLKR 241          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.001e-12
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMN   HPHGGG+ QH+G+P TV R+ P G K G I+ARRTGR +G
Sbjct:  191 RGVAMNAAFHPHGGGSHQHVGRPSTVARNTPPGRKVGHIAARRTGRRKG 239          
The following BLAST results are available for this feature:
BLAST of CX300804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RL2_CANGA8.614e-1563.6460S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_ASHGO8.614e-1563.6460S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL8_DROME1.125e-1471.4360S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_TOBAC4.275e-1469.3960S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL2_STAMF2.122e-1367.3550S ribosomal protein L2P OS=Staphylothermus marin... [more]
RL2_METST6.173e-1366.6750S ribosomal protein L2P OS=Methanosphaera stadtm... [more]
RL2_METTH8.062e-1368.7550S ribosomal protein L2P OS=Methanobacterium ther... [more]
RL2_SCHPO1.796e-1266.0060S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL2_METS34.001e-1266.6750S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_DESK14.001e-1263.2750S ribosomal protein L2P OS=Desulfurococcus kamch... [more]

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Properties
Property NameValue
Genbank descriptionC08002D09SK PhyRootSw1 Citrus sinensis cDNA clone C08002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300804 ID=CX300804; Name=CX300804; organism=Citrus sinensis; type=EST; length=384bp
TTCGGCACGAGGTTTTTTTTTTTTTTTTTTTTTATTATAGCATTATTGTT
AAGATTATTGGGTAAAGTCAATCAATTGTTTCGATTGCAATTTGTTTTGA
TTTTATTCAAGGGCAGTAGATGCTTTTAAGTATAACTACTACATTGGATT
TATCGAGGGTTAATTTTCATAGGGGATCTCTCACTTATTTGATATATATT
ATTTATACAATTTATACTTCATCAGTGCGTAAAGATCCTCTGACTCTTCC
AGTACGACGAGCAGAGATTTGACCAGACTTGGCACCGGCTGGCTTGTCTC
TTCTGACAGTACCTGGCTTACCCATGTGCTGTTGGTTACCACCACCGTGA
GGGTGATCAACAGGGTTCATGGCAACACCACGGA
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