CX300804

Overview
NameCX300804
Unique NameCX300804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.986e-11
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = -3
Query:  248 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTG 382
            RGVAMN VDHP GGG  QH+GKP TV R+ P G K G I+ARRTG
Sbjct:  190 RGVAMNAVDHPFGGGKHQHVGKPKTVSRNAPPGRKVGSIAARRTG 234          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.986e-11
Identity = 31/46 (67.39%), Postives = 33/46 (71.74%), Query Frame = -3
Query:  245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382
            RGVAMN VDHP GGG  QH G+P TV R  P G K G I+ARRTGR
Sbjct:  190 RGVAMNAVDHPFGGGRHQHKGRPSTVARTAPPGRKVGHIAARRTGR 235          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.593e-11
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = -3
Query:  239 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVR 382
            RGVAMNPV HPHGGG+ +  GKP TV R  P G K G I+AR+TGR +
Sbjct:  191 RGVAMNPVSHPHGGGSHKRPGKPTTVARTAPPGQKVGHIAARKTGRAK 238          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.387e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMN VDHPHGGG  Q + +P TV R+ P G K G I+ARRTGR  G
Sbjct:  189 RGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEG 237          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.387e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMN VDHPHGGG  Q + +P TV R+ P G K G I+ARRTGR  G
Sbjct:  189 RGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEG 237          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.387e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMN VDHPHGGG  Q + +P TV R+ P G K G I+ARRTGR  G
Sbjct:  189 RGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEG 237          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_SULIM (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.387e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMN VDHPHGGG  Q + +P TV R+ P G K G I+ARRTGR  G
Sbjct:  189 RGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEG 237          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_SULIL (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.387e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMN VDHPHGGG  Q + +P TV R+ P G K G I+ARRTGR  G
Sbjct:  189 RGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEG 237          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_SULIK (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.387e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMN VDHPHGGG  Q + +P TV R+ P G K G I+ARRTGR  G
Sbjct:  189 RGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEG 237          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_SULIA (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.387e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = -3
Query:  236 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRG 382
            RGVAMN VDHPHGGG  Q + +P TV R+ P G K G I+ARRTGR  G
Sbjct:  189 RGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEG 237          
The following BLAST results are available for this feature:
BLAST of CX300804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RL2_ARCFU1.986e-1168.8950S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]
RL2_AERPE1.986e-1167.3950S ribosomal protein L2P OS=Aeropyrum pernix GN=r... [more]
RL2_KORCO2.593e-1162.5050S ribosomal protein L2P OS=Korarchaeum cryptofil... [more]
RL2_SULSO3.387e-1163.2750S ribosomal protein L2P OS=Sulfolobus solfataric... [more]
RL2_SULIY3.387e-1163.2750S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIN3.387e-1163.2750S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIM3.387e-1163.2750S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIL3.387e-1163.2750S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIK3.387e-1163.2750S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIA3.387e-1163.2750S ribosomal protein L2P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionC08002D09SK PhyRootSw1 Citrus sinensis cDNA clone C08002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300804 ID=CX300804; Name=CX300804; organism=Citrus sinensis; type=EST; length=384bp
TTCGGCACGAGGTTTTTTTTTTTTTTTTTTTTTATTATAGCATTATTGTT
AAGATTATTGGGTAAAGTCAATCAATTGTTTCGATTGCAATTTGTTTTGA
TTTTATTCAAGGGCAGTAGATGCTTTTAAGTATAACTACTACATTGGATT
TATCGAGGGTTAATTTTCATAGGGGATCTCTCACTTATTTGATATATATT
ATTTATACAATTTATACTTCATCAGTGCGTAAAGATCCTCTGACTCTTCC
AGTACGACGAGCAGAGATTTGACCAGACTTGGCACCGGCTGGCTTGTCTC
TTCTGACAGTACCTGGCTTACCCATGTGCTGTTGGTTACCACCACCGTGA
GGGTGATCAACAGGGTTCATGGCAACACCACGGA
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