CX300804
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.387e-11 Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = -3 Query: 245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382 RGVAMN VDHP GGG +QH GKP +V RD P G K G I+++RTGR Sbjct: 191 RGVAMNAVDHPFGGGGRQHPGKPKSVSRDTPPGRKVGDIASKRTGR 236
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.778e-11 Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = -3 Query: 245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382 RGVAMN VDHP+GGG QH+GKP +V R+ G K G I++RRTGR Sbjct: 194 RGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHIASRRTGR 239
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11 Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = -3 Query: 248 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTG 382 RGVAMN VDHP GGG +QH G+P TV R+ P G K G I+ARRTG Sbjct: 191 RGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSIAARRTG 235
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11 Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = -3 Query: 245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382 RGVAMN VDHP GGG +QH G+P TV R P G K G I+ARRTG+ Sbjct: 190 RGVAMNAVDHPFGGGGRQHPGRPKTVSRGTPPGRKVGSIAARRTGK 235
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11 Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = -3 Query: 245 GVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 379 G+AMN VDHP GGGN++H GKP TV R+ P G K G I+ARRTG+ Sbjct: 192 GIAMNVVDHPFGGGNRKHPGKPTTVSRNAPPGRKVGHIAARRTGK 236
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11 Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = -3 Query: 233 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGS 382 RGVAMN V+HPHGGGN QH+G+P TV R+ P G K G++S +R +V GS Sbjct: 185 RGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVGRLSPKRR-KVNGS 233
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2) HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11 Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = -3 Query: 233 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGS 382 RGVAMN V HPHGGG Q + +P TV R+ P G K G I+ARRTGR G+ Sbjct: 189 RGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEGA 238
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11 Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = -3 Query: 245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382 RGVAMN VDHP+GGG QH+GKP +V R G K G I++RRTGR Sbjct: 194 RGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHIASRRTGR 239
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11 Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = -3 Query: 245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382 RGVAMN VDHP+GGG QH+GKP +V R G K G I++RRTGR Sbjct: 194 RGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHIASRRTGR 239
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11 Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = -3 Query: 245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382 RGVAMN VDHP+GGG QH+GKP +V R G K G I++RRTGR Sbjct: 194 RGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHIASRRTGR 239 The following BLAST results are available for this feature:
BLAST of CX300804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 53
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300804 ID=CX300804; Name=CX300804; organism=Citrus sinensis; type=EST; length=384bpback to top |