CX300804

Overview
NameCX300804
Unique NameCX300804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.387e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = -3
Query:  245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382
            RGVAMN VDHP GGG +QH GKP +V RD P G K G I+++RTGR
Sbjct:  191 RGVAMNAVDHPFGGGGRQHPGKPKSVSRDTPPGRKVGDIASKRTGR 236          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.778e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = -3
Query:  245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382
            RGVAMN VDHP+GGG  QH+GKP +V R+   G K G I++RRTGR
Sbjct:  194 RGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHIASRRTGR 239          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = -3
Query:  248 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTG 382
            RGVAMN VDHP GGG +QH G+P TV R+ P G K G I+ARRTG
Sbjct:  191 RGVAMNAVDHPFGGGGRQHPGRPKTVSRNTPPGRKVGSIAARRTG 235          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = -3
Query:  245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382
            RGVAMN VDHP GGG +QH G+P TV R  P G K G I+ARRTG+
Sbjct:  190 RGVAMNAVDHPFGGGGRQHPGRPKTVSRGTPPGRKVGSIAARRTGK 235          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = -3
Query:  245 GVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 379
            G+AMN VDHP GGGN++H GKP TV R+ P G K G I+ARRTG+
Sbjct:  192 GIAMNVVDHPFGGGNRKHPGKPTTVSRNAPPGRKVGHIAARRTGK 236          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = -3
Query:  233 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGS 382
            RGVAMN V+HPHGGGN QH+G+P TV R+ P G K G++S +R  +V GS
Sbjct:  185 RGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVGRLSPKRR-KVNGS 233          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = -3
Query:  233 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGS 382
            RGVAMN V HPHGGG  Q + +P TV R+ P G K G I+ARRTGR  G+
Sbjct:  189 RGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTGRKEGA 238          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = -3
Query:  245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382
            RGVAMN VDHP+GGG  QH+GKP +V R    G K G I++RRTGR
Sbjct:  194 RGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHIASRRTGR 239          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = -3
Query:  245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382
            RGVAMN VDHP+GGG  QH+GKP +V R    G K G I++RRTGR
Sbjct:  194 RGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHIASRRTGR 239          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = -3
Query:  245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382
            RGVAMN VDHP+GGG  QH+GKP +V R    G K G I++RRTGR
Sbjct:  194 RGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHIASRRTGR 239          
The following BLAST results are available for this feature:
BLAST of CX300804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RL2_NATPD3.387e-1165.2250S ribosomal protein L2P OS=Natronomonas pharaoni... [more]
RL2_METVS5.778e-1163.0450S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_UNCMA7.546e-1166.6750S ribosomal protein L2P OS=Uncultured methanogen... [more]
RL2_METTP7.546e-1165.2250S ribosomal protein L2P OS=Methanosaeta thermoph... [more]
RL2_METBU7.546e-1164.4450S ribosomal protein L2P OS=Methanococcoides burt... [more]
RL2_THEVO9.855e-1160.0050S ribosomal protein L2P OS=Thermoplasma volcaniu... [more]
RL2_SULTO9.855e-1160.0050S ribosomal protein L2P OS=Sulfolobus tokodaii G... [more]
RL2_METM79.855e-1163.0450S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM69.855e-1163.0450S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM59.855e-1163.0450S ribosomal protein L2P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionC08002D09SK PhyRootSw1 Citrus sinensis cDNA clone C08002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300804 ID=CX300804; Name=CX300804; organism=Citrus sinensis; type=EST; length=384bp
TTCGGCACGAGGTTTTTTTTTTTTTTTTTTTTTATTATAGCATTATTGTT
AAGATTATTGGGTAAAGTCAATCAATTGTTTCGATTGCAATTTGTTTTGA
TTTTATTCAAGGGCAGTAGATGCTTTTAAGTATAACTACTACATTGGATT
TATCGAGGGTTAATTTTCATAGGGGATCTCTCACTTATTTGATATATATT
ATTTATACAATTTATACTTCATCAGTGCGTAAAGATCCTCTGACTCTTCC
AGTACGACGAGCAGAGATTTGACCAGACTTGGCACCGGCTGGCTTGTCTC
TTCTGACAGTACCTGGCTTACCCATGTGCTGTTGGTTACCACCACCGTGA
GGGTGATCAACAGGGTTCATGGCAACACCACGGA
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