CX300804

Overview
NameCX300804
Unique NameCX300804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = -3 
Query:  245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382
            RGVAMN VDHP GGGN QH GKP T+ R    G K G I+ARRTG+
Sbjct:  194 RGVAMNAVDHPFGGGNTQHAGKPTTISRHTSPGRKVGHIAARRTGK 239
[Close]
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = -3 
Query:  245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382
            RGVAMN VDHP GGG +QH G+P +V RD P G K G I+++RTGR
Sbjct:  191 RGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVGDIASKRTGR 236
[Close]
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = -3 
Query:  245 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGR 382
            RGVAMN VDHP GGG +QH G+P +V RD P G K G I+++RTGR
Sbjct:  191 RGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVGDIASKRTGR 236
The following BLAST results are available for this feature:
BLAST of CX300804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RL2_META39.855e-1165.2250S ribosomal protein L2P OS=Methanococcus aeolicu... [more]
RL2_HALWD9.855e-1163.0450S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL2_HALLT9.855e-1163.0450S ribosomal protein L2P OS=Halorubrum lacusprofu... [more]

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Properties
Property NameValue
Genbank descriptionC08002D09SK PhyRootSw1 Citrus sinensis cDNA clone C08002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300804 ID=CX300804; Name=CX300804; organism=Citrus sinensis; type=EST; length=384bp
TTCGGCACGAGGTTTTTTTTTTTTTTTTTTTTTATTATAGCATTATTGTT
AAGATTATTGGGTAAAGTCAATCAATTGTTTCGATTGCAATTTGTTTTGA
TTTTATTCAAGGGCAGTAGATGCTTTTAAGTATAACTACTACATTGGATT
TATCGAGGGTTAATTTTCATAGGGGATCTCTCACTTATTTGATATATATT
ATTTATACAATTTATACTTCATCAGTGCGTAAAGATCCTCTGACTCTTCC
AGTACGACGAGCAGAGATTTGACCAGACTTGGCACCGGCTGGCTTGTCTC
TTCTGACAGTACCTGGCTTACCCATGTGCTGTTGGTTACCACCACCGTGA
GGGTGATCAACAGGGTTCATGGCAACACCACGGA
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