CX300803

Overview
NameCX300803
Unique NameCX300803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.228e-24
Identity = 53/64 (82.81%), Postives = 62/64 (96.88%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            V+P RRVNQAI+L+ TGAREA+FRN+KTIAECLADE+INAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:  147 VAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.910e-24
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRVNQAI+L+ TGAREA+FRNIKTIAECLADE+INA +GSSNSYAIKKKDE+ERVAK+NR
Sbjct:  141 VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.910e-24
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRVNQAI+L+ TGAREA+FRNIK IAECLADE+INAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:  141 VSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.169e-23
Identity = 50/64 (78.12%), Postives = 61/64 (95.31%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRVNQA+ L+T GAREA+FRN+K+I+ECLA+E+INAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:  140 VSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.169e-23
Identity = 50/64 (78.12%), Postives = 61/64 (95.31%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRVNQA+ L+T GAREA+FRN+K+I+ECLA+E+INAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:  140 VSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 4.647e-22
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRVNQAI L+T GAREA+FRNIKTIAE LA+E+INAA+GSS SYAIKKKDE+ERVAK+NR
Sbjct:  162 VSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.265e-19
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRVN A+YL+T G R A+FRNI+T+AECLADE+INA++GS NSY+IK+KD +ER AK++R
Sbjct:  127 VSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR 190          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.225e-15
Identity = 35/64 (54.69%), Postives = 51/64 (79.69%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RR+N A+YL+  G R  +FRN K++AECLADE++NA++  + S+AI KK+++ERVA +NR
Sbjct:   85 VSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 8.783e-13
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            V+P RRV+QA+  +  GAR+ +F N K I ECLA+E+I AARG   SYAI++K+EIER+A ++R
Sbjct:  142 VAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIALSSR 205          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.338e-12
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRV++A+  + TGA  ASF++ K+I  CLADE++ AAR    S+AI KK+EIERVA++ R
Sbjct:  121 VSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMAAARNDPTSFAISKKEEIERVAQSAR 184          
The following BLAST results are available for this feature:
BLAST of CX300803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS5_CAEEL2.228e-2482.8140S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS5_RAT2.910e-2484.3840S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_MOUSE2.910e-2484.3840S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5B_SCHPO7.169e-2378.1340S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO7.169e-2378.1340S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_YEAST4.647e-2281.2540S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5_DICDI1.265e-1967.1940S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI3.225e-1554.6940S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS7_AERPE8.783e-1354.6930S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]
RS7_THEAC3.338e-1254.6930S ribosomal protein S7P OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionC08002D08SK PhyRootSw1 Citrus sinensis cDNA clone C08002D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300803 ID=CX300803; Name=CX300803; organism=Citrus sinensis; type=EST; length=438bp
CTCGTGCCGAATTCGGCACGAGGGTCTCTCCTTTCCGAAGAGTCAACCAA
GCCATCTACTTAATGACCACCGGCGCTCGTGAAGCTTCTTTCCGCAACAT
CAAGACTATTGCTGAATGCCTTGCTGATGAAGTCATCAACGCTGCCCGTG
GATCATCTAACAGCTATGCTATCAAGAAGAAGGATGAAATCGAACGTGTT
GCTAAGGCTAACCGTTAAGCGCTCCTCATCACTCTGCGCTGTAGCCCTCC
TCCTTACCGCTTCTTTCCCTTTCTACCTGCTCTCGGAAGATTGTATGCTT
TCTTATTATTATCGATGATTTGATGATAGAAGCTTACTTTTTTCTTGATC
GTAGCGGATTTTCAGTATATACATATGAATTCCCCCTTGTACTACTACCA
ACCTTTCTGTTTGGATCAAAAGTAATTAATATCATATC
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