CX300803

Overview
NameCX300803
Unique NameCX300803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.359e-12
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RRV++A+  + TGA  ASF++ K+I  CLADE++ AA+  ++S+AI KK+EIERVA++ R
Sbjct:  121 VSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMLAAKNDASSFAISKKEEIERVAQSAR 184          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RR++ A+  +T GAR  SF N K I ECLADE+I AA     SYA++K++E+ER+A A+R
Sbjct:  161 VSPQRRLDLALRWITEGARTCSFNNPKPIEECLADEIIAAASNDPRSYAVRKREELERIAAASR 224          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RR++ A+  +T GAR  SF N K I ECLADE+I AA     SYA++K++E+ER+A A+R
Sbjct:  160 VSPQRRLDLALRWITEGARACSFNNPKPIEECLADEIIAAAANDPKSYAVRKREELERIAAASR 223          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP +R++ AI  ++ G R ASFRN  T+AE +A+E+I A+  S NSYA+ KK EIER+A++NR
Sbjct:  145 VSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQSNR 208          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.268e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RR++ A+  +T GAR  SF N K I ECLADE++ AA     SYA++K++E+ER+A A+R
Sbjct:  161 VSPQRRLDLALRWITEGARACSFNNPKPIEECLADELVAAAANDPKSYAVRKREELERIAAASR 224          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.656e-11
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 3
Query:   24 VSPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            VSP RR++ A+  + TGA++ASF N K I E LA+E+I AA   S S+AIK+K+EIER+A ++R
Sbjct:  130 VSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAANNDSKSFAIKRKEEIERIALSSR 193          
BLAST of CX300803 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 32/63 (50.79%), Postives = 49/63 (77.78%), Query Frame = 3
Query:   27 SPFRRVNQAIYLMTTGAREASFRNIKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 215
            SP RR++ A+ L+T GA++ +FRN K I ECLA+E+I AAR  +  ++I++K+EIER+A+A R
Sbjct:  135 SPQRRLDIALRLITEGAQQRAFRNPKPIEECLAEEIIAAARYDTECHSIRRKEEIERIAEAAR 197          
The following BLAST results are available for this feature:
BLAST of CX300803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS7_THEVO4.359e-1253.1330S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]
RS7_PYRIL5.693e-1253.1330S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_PYRAE5.693e-1253.1330S ribosomal protein S7P OS=Pyrobaculum aerophilu... [more]
RS5_ENCCU5.693e-1253.1340S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_THENV1.268e-1151.5630S ribosomal protein S7P OS=Thermoproteus neutrop... [more]
RS7_SULSO1.656e-1153.1330S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS7_METKA6.295e-1150.7930S ribosomal protein S7P OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionC08002D08SK PhyRootSw1 Citrus sinensis cDNA clone C08002D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300803 ID=CX300803; Name=CX300803; organism=Citrus sinensis; type=EST; length=438bp
CTCGTGCCGAATTCGGCACGAGGGTCTCTCCTTTCCGAAGAGTCAACCAA
GCCATCTACTTAATGACCACCGGCGCTCGTGAAGCTTCTTTCCGCAACAT
CAAGACTATTGCTGAATGCCTTGCTGATGAAGTCATCAACGCTGCCCGTG
GATCATCTAACAGCTATGCTATCAAGAAGAAGGATGAAATCGAACGTGTT
GCTAAGGCTAACCGTTAAGCGCTCCTCATCACTCTGCGCTGTAGCCCTCC
TCCTTACCGCTTCTTTCCCTTTCTACCTGCTCTCGGAAGATTGTATGCTT
TCTTATTATTATCGATGATTTGATGATAGAAGCTTACTTTTTTCTTGATC
GTAGCGGATTTTCAGTATATACATATGAATTCCCCCTTGTACTACTACCA
ACCTTTCTGTTTGGATCAAAAGTAATTAATATCATATC
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