CX300801

Overview
NameCX300801
Unique NameCX300801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.771e-42
Identity = 79/127 (62.20%), Postives = 96/127 (75.59%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            N    IQL LD+ +G GF +K  YLFG  SM IK+VPGDSAGTVTAF ++S      DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN + IVF VD++PIRV+KN
Sbjct:   49 NGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKN 174          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.138e-42
Identity = 77/128 (60.16%), Postives = 99/128 (77.34%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            N    +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY++S T N  DE+DFEFLGNRTGQP  +QTN++  GKG+REQR+ LWFDP+  YH Y++LWN + IVF+VD++PIRV+KN+
Sbjct:   51 NGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSS-TNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNA 177          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.813e-41
Identity = 77/128 (60.16%), Postives = 98/128 (76.56%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            N    +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY++S T N  DE+DFEFLGNRTGQP  +QTN++  GKG+REQR+ LWFDP+  YH Y+ILWN + IVF+VD++PIR +KN+
Sbjct:   52 NGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSS-TNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNA 178          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.093e-41
Identity = 79/127 (62.20%), Postives = 97/127 (76.38%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            N     +L LD  SG GF S+ +YLFG+VS++IKLV GDSAGTVTAFYM+S+  N  +E DFEFLGN TG+PY VQTNIY NG G+REQR+NLWFDP  ++H Y+ILW+   +VF VD+ PIRV KN
Sbjct:   44 NEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPN-HNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKN 169          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.093e-41
Identity = 75/127 (59.06%), Postives = 99/127 (77.95%), Query Frame = 1
Query:   13 SARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            S + +   LD+ SG GF SK++YLFG++ MKIKLVPG+SAGTVTA+Y++S  E   DE+DFEFLGN TGQPY + TN++  GKG+RE +  LWFDP AD+H YT+LWN  +I+F VD +PIRV+KN+
Sbjct:   45 SGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKGETW-DEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNN 170          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.618e-40
Identity = 75/127 (59.06%), Postives = 96/127 (75.59%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            N  R   L LDQ SG  F+S + +LFG++ MKIKL+ G S GTV A+YM+S+  N RDE+DFEFLGN  GQPY +QTN+YA G  +RE+R++LWFDPA D+H Y+ILWN H IVF VD +PIR+Y+N
Sbjct:   54 NDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQPN-RDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRN 179          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.832e-40
Identity = 72/119 (60.50%), Postives = 94/119 (78.99%), Query Frame = 1
Query:   37 LDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            LD+ SG GF SK++YLFG++ MK+KLV G+SAGTVTA+Y++S      DE+DFEFLGNRTG PYT+ TN++  GKGDRE +  LWFDP AD+H YT+ WN  +I+F VD +PIRV+KN+
Sbjct:   56 LDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKG-TAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNN 173          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.617e-40
Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            N+ + + L LD++SG GF SK +YLFG++ M+IKLVPG+SAGTVT FY+ S   +  DE+DFEFLGN +G PYT+ TN+Y  GKGD+EQ+ +LWFDP A++H Y+ILWN   I+  VDD PIR +KN
Sbjct:   41 NNGQLLTLSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKSEG-STWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKN 166          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.617e-40
Identity = 74/129 (57.36%), Postives = 96/129 (74.42%), Query Frame = 1
Query:    4 VPNSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            + N+   + L LD++SG GF SK +YLFG+VSM++KLVPG+SAGTVT  Y+ S      DE+DFEFLGN +G+PYT+ TN+Y  GKGD+EQ+  LWFDP A++H YTILWN   I+F VD  PIR +KN
Sbjct:   38 IKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKS-PGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKN 165          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.948e-40
Identity = 77/127 (60.63%), Postives = 94/127 (74.02%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            N+   + L LDQ+SG GF SK +YL+G+V M+IKLVPG+SAGTVT FY+ S      DE+DFEFLGN +G PY V TN+Y  GKGDREQ+  LWFDP A +H Y+ILWN  HIVFY+D  PIR +KN
Sbjct:   45 NNGTLLNLGLDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQGLTW-DEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKN 170          
The following BLAST results are available for this feature:
BLAST of CX300801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTHB_PHAAN4.771e-4262.20Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB8.138e-4260.16Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH4_ARATH1.813e-4160.16Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH9_ARATH3.093e-4162.20Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH12_ARATH3.093e-4159.06Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH2.618e-4059.06Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH14_ARATH5.832e-4060.50Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH24_ARATH7.617e-4057.48Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH22_ARATH7.617e-4057.36Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH21_ARATH9.948e-4060.63Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC08002D06SK PhyRootSw1 Citrus sinensis cDNA clone C08002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300801 ID=CX300801; Name=CX300801; organism=Citrus sinensis; type=EST; length=395bp
CTCGTGCCGAATTCGGCACGAGGCATCCAGCTAGTTCTAGACCAAAATTC
AGGATGTGGGTTTGCTTCCAAAAGGCAGTACTTGTTCGGGCGTGTAAGCA
TGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCACTGCATTT
TATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGATTTTGAGTT
CCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAATATCTATG
CAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGTTTGACCCT
GCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCACCATATTGT
CTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAGTGG
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