CX300801

Overview
NameCX300801
Unique NameCX300801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.948e-40
Identity = 72/128 (56.25%), Postives = 97/128 (75.78%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            N    + L LDQ SG GF SK++YLFGR+ M++KLV G+SAGTVTA+Y++S      DE+DFEFLGN TG+PY + TN++A GKGDREQ+  LWFDP  ++H Y+I+W   HI+F VD++PIRV+ N+
Sbjct:   45 NGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGAT-HDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNA 171          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.697e-39
Identity = 73/130 (56.15%), Postives = 99/130 (76.15%), Query Frame = 1
Query:    4 VPNSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            +  S + +   LD+ SG GF SK++YLFG++ MK+KLV G+SAGTVTA+Y++S  E   DE+DFEFLGN TGQPY + TN++  GKG+RE +  LWFDP AD+H YT+LWN  +I+F VD +PIRV+KN+
Sbjct:   41 IVESGQLLTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSKGETW-DEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNN 169          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.876e-38
Identity = 69/123 (56.10%), Postives = 96/123 (78.05%), Query Frame = 1
Query:   25 IQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            + L LD+ SG GF SK++YLFGR+ M++KLV G+SAGTVTA+Y++S      DE+DFEFLGN TG+PY + TN++A GKG+REQ+  LWFDP  ++H Y+++W   HI+F VD+VPIRV+ N+
Sbjct:   49 LSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSEGPT-HDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNA 170          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.450e-38
Identity = 72/129 (55.81%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    4 VPNSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            + N+   + L LD+ SG GF SK +YLFG++ M+IKLV G+SAGTVTA+Y+ S   +  DE+DFEFLGN +G PYT+ TN++  GKGDREQ+  LWFDP +D+H Y+ILWN   I+F VD  PIR +KN
Sbjct:   41 ITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKS-PGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKN 168          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.459e-38
Identity = 70/128 (54.69%), Postives = 96/128 (75.00%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            N  + + L LD+ SG GF SK++YLFGR+ M++KLV G+SAGTVTA+Y++S      DE+DFEFLGN +G PY + TNI+  GKG+REQ+  LWFDP  ++H Y+I+W   HI+F VD+ PIRV+KN+
Sbjct:   49 NGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPT-HDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNA 175          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.995e-36
Identity = 65/121 (53.72%), Postives = 90/121 (74.38%), Query Frame = 1
Query:   25 IQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYK 387
            + L LD++SG GF SK  YLFG  S+++KLV G+SAGTVT+FY++S   +  DE+D EF+GN +G PY + TN++ANG G +E +  LWFDP AD+H Y I+WN  +I+F VDDVP+R +K
Sbjct:   53 VALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFK 173          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.995e-36
Identity = 71/127 (55.91%), Postives = 89/127 (70.08%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            N  + +QL +D +SG GF SK  Y  G   M+IKL P DSAG VTAFY+ S  +   DE+DFEFLGNR G+P  +QTN+++NG+G REQ+   WFDP   +H Y ILWN + IVFYVD VPIRV+KN
Sbjct:   49 NQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGDT-HDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKN 174          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.995e-36
Identity = 66/131 (50.38%), Postives = 94/131 (71.76%), Query Frame = 1
Query:    1 LVPNSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            ++ N    + L LD+ SG GF S +++L+G+V +++KLVPG+SAGTVT FY+ S      DE+DFEFLGN +G PYT+ TN+Y  G GD+EQ+ +LWFDP  D+H Y I+WN   ++F +D +PIR +KNS
Sbjct:   44 ILDNVGNLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKS-PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNS 173          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.673e-36
Identity = 69/122 (56.56%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   25 IQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            ++LVLD+++G    SK  +LFG V M IKLVPG+SAGTV A+Y++S T +  DE+DFEFLGN TGQPYT+ TN+YA GKG+REQ+   WF+P   +H YTI WN   +V++VD  PIRV++N
Sbjct:   49 LRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSS-TGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRN 169          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.138e-35
Identity = 65/123 (52.85%), Postives = 90/123 (73.17%), Query Frame = 1
Query:   25 IQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            + L LD++SG GF S +++L+G+  +++KLVPG+SAGTVT FY+ S      DE+DFEFLGN +G PYT+ TN+Y  G GD+EQ+ +LWFDP  ++H Y I WN   I+F VD +PIR +KNS
Sbjct:   52 LSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS-PGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNS 173          
The following BLAST results are available for this feature:
BLAST of CX300801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH15_ARATH9.948e-4056.25Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH1.697e-3956.15Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH16_ARATH1.876e-3856.10Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH23_ARATH2.450e-3855.81Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN5.459e-3854.69Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH8_ORYSJ2.995e-3653.72Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH2_ARATH2.995e-3655.91Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH20_ARATH2.995e-3650.38Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH26_ARATH6.673e-3656.56Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH1.138e-3552.85Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC08002D06SK PhyRootSw1 Citrus sinensis cDNA clone C08002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300801 ID=CX300801; Name=CX300801; organism=Citrus sinensis; type=EST; length=395bp
CTCGTGCCGAATTCGGCACGAGGCATCCAGCTAGTTCTAGACCAAAATTC
AGGATGTGGGTTTGCTTCCAAAAGGCAGTACTTGTTCGGGCGTGTAAGCA
TGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCACTGCATTT
TATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGATTTTGAGTT
CCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAATATCTATG
CAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGTTTGACCCT
GCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCACCATATTGT
CTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAGTGG
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