CX300801

Overview
NameCX300801
Unique NameCX300801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.942e-35
Identity = 68/128 (53.12%), Postives = 93/128 (72.66%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            N  + +QL LD +SG GF SK  Y  G   ++IK+ P D++G VTAFY+ S   N  DE+DFEFLGN+ G+   VQTN++ NGKG+REQ++ LWFDP+ D+H Y ILWN + IV YVD++P+RV+KN+
Sbjct:   56 NQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKG-NTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNT 181          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.942e-35
Identity = 65/128 (50.78%), Postives = 92/128 (71.88%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            N  + + L LD++SG GF S +++L+G+  +++KLVPG+SAGTVT FY+ S      DE+DFEFLGN +G PYT+ TN+Y  G GD+EQ+ +LWFDP A++H Y I WN   I+F VD +PIR + N+
Sbjct:   42 NQGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS-PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNPQRIIFTVDGIPIREFMNA 168          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.649e-35
Identity = 64/122 (52.46%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   25 IQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            + L LD++SG GF S +++L+G+  +++KLVPG+SAGTVT FY+ S      DE+DFEFLGN +G PYT+ TN+Y  G GD+EQ+ +LWFDP  ++H Y I WN   I+F VD +PIR +KN
Sbjct:   52 LSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS-PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKN 172          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.662e-34
Identity = 67/127 (52.76%), Postives = 89/127 (70.08%), Query Frame = 1
Query:   10 NSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            +S   + L +DQ+SG GF SK  Y  G   M+IK+  G++ G VTAFY+ S      DE+DFEFLGN  G+P T+QTN++ NG+G+RE+R  LWF+P   YH Y +LWN + IVFYVD++PIRVYKN
Sbjct:   52 HSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGGG-HDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN 177          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.456e-30
Identity = 66/135 (48.89%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 LVPNSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT--ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD--REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            +V    + ++L LD+ +G GF S   YL G  S  IKL    SAG V AFY+++    E   DE+DFEFLGN  G+ + +QTNIY NG     RE+R NLWFDP  D+H Y+ILW+  HI+FYVD+VPIR  K +
Sbjct:   45 IVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRT 179          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.219e-29
Identity = 65/134 (48.51%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    4 VPNSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT--ENVRDELDFEFLGNRTGQPYTVQTNIYANGK--GDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            V    + ++L LD+ +G GF S   YL G  S  IKL    +AG V AFYM++    E   DE+DFEFLGN   + + VQTNIY NG     RE+R NLWFDP  D+H Y+ILW+  HI+F+VD+VPIR  K +
Sbjct:   46 VHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRT 179          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.715e-29
Identity = 62/127 (48.82%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   25 IQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENV--RDELDFEFLGNRTGQPYTVQTNIYANGKGDR-----EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVY 384
            + L LD+++G GF S R Y  G     IKL PG +AG  T+ Y+++N E+    DE+D EFLG   G+PY++QTN++  G GDR     E +  LWFDP  D+H Y ILWN + IVF+VDDVPIR Y
Sbjct:   59 VTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTY 185          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.032e-28
Identity = 62/131 (47.33%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 LVPNSARGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNS 393
            LV N    +QL LD+NSG GF S+  Y  G  +++IK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +
Sbjct:   37 LVINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKN 165          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.946e-27
Identity = 58/123 (47.15%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   37 LDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTEN--VRDELDFEFLGNRTGQPYTVQTNIYANGKGD-----REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVY 384
            LD+ SG GF S + +  G     IKL PG +AG +T+ Y+++N  +    DE+D EFLG   G+PYT+QTN+Y  G GD     RE +  LWFDP  D+H Y ILW+   I+F VDD+PIR Y
Sbjct:   67 LDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRY 189          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.319e-27
Identity = 60/122 (49.18%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   25 IQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT--ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIR 378
            ++L+LD+ +G GF S   Y  G  S  IKL    +AG V AFY ++    E   DELD EFLGN  G+P+  QTN+Y NG   R  E+R  LWFDP+ ++H Y+ILW  H I+F+VDDVPIR
Sbjct:   54 VRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIR 175          
The following BLAST results are available for this feature:
BLAST of CX300801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH1_ARATH1.942e-3553.13Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH19_ARATH1.942e-3550.78Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH5.649e-3552.46Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH3_ARATH3.662e-3452.76Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH28_ARATH2.456e-3048.89Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.219e-2948.51Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH2.715e-2948.82Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH1.032e-2847.33Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH1.946e-2747.15Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH3.319e-2749.18Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC08002D06SK PhyRootSw1 Citrus sinensis cDNA clone C08002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300801 ID=CX300801; Name=CX300801; organism=Citrus sinensis; type=EST; length=395bp
CTCGTGCCGAATTCGGCACGAGGCATCCAGCTAGTTCTAGACCAAAATTC
AGGATGTGGGTTTGCTTCCAAAAGGCAGTACTTGTTCGGGCGTGTAAGCA
TGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCACTGCATTT
TATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGATTTTGAGTT
CCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAATATCTATG
CAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGTTTGACCCT
GCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCACCATATTGT
CTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAGTGG
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