CX300801

Overview
NameCX300801
Unique NameCX300801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.793e-26
Identity = 56/126 (44.44%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   28 QLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENV---RDELDFEFLGNRTGQPYTVQTNIYANG--KGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN 390
            +L LD++SG G  SK +Y +G  S ++KL  G ++G V AFY+ SN E      DE+D E LG      +T+QTN+YANG  +  RE++   WFDP   +H YT++WN HH VF VD++P+R + N
Sbjct:   64 KLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYL-SNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPN 188          
BLAST of CX300801 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.793e-26
Identity = 60/124 (48.39%), Postives = 80/124 (64.52%), Query Frame = 1
Query:   19 RGIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRD--ELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIR 378
            R ++L+LD+ +G GF S   Y  G  S  IKL    +AG V AFY ++    V+D  ELD EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+ ++H Y+ILW    I+F+VDDVPIR
Sbjct:   60 RSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIR 183          
The following BLAST results are available for this feature:
BLAST of CX300801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH33_ARATH4.793e-2644.44Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH4.793e-2648.39Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC08002D06SK PhyRootSw1 Citrus sinensis cDNA clone C08002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300801 ID=CX300801; Name=CX300801; organism=Citrus sinensis; type=EST; length=395bp
CTCGTGCCGAATTCGGCACGAGGCATCCAGCTAGTTCTAGACCAAAATTC
AGGATGTGGGTTTGCTTCCAAAAGGCAGTACTTGTTCGGGCGTGTAAGCA
TGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCACTGCATTT
TATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGATTTTGAGTT
CCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAATATCTATG
CAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGTTTGACCCT
GCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCACCATATTGT
CTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAGTGG
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