CX043932

Overview
NameCX043932
Unique NameCX043932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA4_HUMAN (Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.338e-17
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  169 LVEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            +VE+RKNKR+++LLK+R             D        +LE+I   VQ   S++  +QL A    RKLLS +R+PPID++IK+G++P  V  L R D P LQFEAAWAL
Sbjct:   33 VVELRKNKRDEHLLKRRNVPHEDICEDSDIDGDYRVQNTSLEAI---VQNASSDNQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWAL 139          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA2_HUMAN (Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.747e-17
Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            VE+RK K++D +LK+R               ++N       S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLGR D   +QFE+AWAL
Sbjct:   36 VELRKAKKDDQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWAL 144          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA1_SCHPO (Importin subunit alpha-1 OS=Schizosaccharomyces pombe GN=cut15 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.083e-17
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLE---SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            +EIRK KRE+NL K+R                Q+  E +LE    +P +++ ++S+D   Q++AT +FRK LS E +PPI +VI AGVVPRFVEFL  H+   L+FEA+WAL
Sbjct:   36 IEIRKQKREENLNKRRNLVDVQEPAEETIPLEQDK-ENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEFLS-HENNLLKFEASWAL 145          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA2_MOUSE (Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.132e-16
Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            VE+RK K+++ +LK+R               ++N       S+  +V+G+ S +   QL+AT   RKLLS E+ PPID +I+AG++P+FV FLG+ D   +QFE+AWAL
Sbjct:   36 VELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 144          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA7_BOVIN (Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNL--ESIPS--MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFEAAWAL 498
            +++RK KRE  L K+R                 ++   +   ES+ +  MV+ ++S+DP LQL  T +FRKLLS E SPPIDEVI   GVV RFVEFL R++   LQFEAAWAL
Sbjct:   36 IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWAL 149          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA2_XENLA (Importin subunit alpha-2 OS=Xenopus laevis GN=kpna2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 7.340e-16
Identity = 43/109 (39.45%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            VE+RK K+++ +LK+R               +  +I+    S+  +VQG+ S D   +L +T   RK+LS ER+PP++++I+AG++P+ VEFL  H+   LQFEAAWAL
Sbjct:   33 VELRKAKKDEQILKRRNVCFPEELILSPEKNAMQSIQVPQLSLEEIVQGMNSGDNENELRSTQAARKMLSKERNPPLNDIIEAGLIPKLVEFLSYHNNSTLQFEAAWAL 141          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA5_DANRE (Importin subunit alpha-6 OS=Danio rerio GN=kpna5 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.635e-15
Identity = 53/117 (45.30%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRR-------EGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            +++RK KRE+ L K+R        E            +S   +         ++Q ++SEDP  QL AT +FRKLLS E +PPIDEVI   GVV RFVEFL R D   LQFEAAWAL
Sbjct:   33 IQLRKQKREEQLFKRRNVSLPPGDESMLECPIQDPDVSSTVPVSGEGVITQDVIQMIFSEDPDQQLIATQKFRKLLSKEPNPPIDEVIGTPGVVNRFVEFLRRSDNCTLQFEAAWAL 149          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA2_SCHPO (Importin subunit alpha-2 OS=Schizosaccharomyces pombe GN=imp1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.635e-15
Identity = 53/114 (46.49%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXX---DASQNAIEKNL-ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFL-GRHDMPQLQFEAAWAL 498
            +EIRK KRE++L K+R                D SQ  +E+ + +  P +   V S+D  LQL A T+FRK LS E  PPID+VI  GVV RFV+FL   H +  LQFEAAWAL
Sbjct:   33 IEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQSQVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFLESEHHL--LQFEAAWAL 144          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA5_RAT (Importin subunit alpha-6 OS=Rattus norvegicus GN=Kpna5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPS-------MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            +++RK KRE+ L K+R                Q+    +   IP        M+Q ++S +   QL AT +FRKLLS E +PPID+VI K GVV RFV+FL R++   LQFEAAWAL
Sbjct:   33 IQLRKQKREEQLFKRRNVSLPRNDDCMLESPIQDPDVSSTVPIPEEDMITADMIQMIFSNNAEQQLTATQKFRKLLSKEPNPPIDQVIQKPGVVQRFVKFLERNENCTLQFEAAWAL 149          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA1_YEAST (Importin subunit alpha OS=Saccharomyces cerevisiae GN=SRP1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRR------EGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            VE+RK KR++ L K+R                    A Q    +  + +P M Q + S+D   QL AT +FR++LS E  PPID VI+AGVVPR VEF+  +    LQ EAAWAL
Sbjct:   41 VELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWAL 155          
The following BLAST results are available for this feature:
BLAST of CX043932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
IMA4_HUMAN1.338e-1744.55Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 ... [more]
IMA2_HUMAN1.747e-1742.20Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 ... [more]
IMA1_SCHPO5.083e-1745.54Importin subunit alpha-1 OS=Schizosaccharomyces po... [more]
IMA2_MOUSE1.132e-1640.37Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 ... [more]
IMA7_BOVIN5.620e-1646.49Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE... [more]
IMA2_XENLA7.340e-1639.45Importin subunit alpha-2 OS=Xenopus laevis GN=kpna... [more]
IMA5_DANRE1.635e-1545.30Importin subunit alpha-6 OS=Danio rerio GN=kpna5 P... [more]
IMA2_SCHPO1.635e-1546.49Importin subunit alpha-2 OS=Schizosaccharomyces po... [more]
IMA5_RAT3.643e-1542.74Importin subunit alpha-6 OS=Rattus norvegicus GN=K... [more]
IMA1_YEAST3.643e-1541.74Importin subunit alpha OS=Saccharomyces cerevisiae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14D03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14D03-H6-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043932 ID=CX043932; Name=CX043932; organism=Citrus sinensis; type=EST; length=500bp
CTCACTCTCCCTTAATCTCTCGTTCATTTCAAGATTTTGTAAAAAAAGCG
GAAGAAAGGCCGAAAGAACGACATGTCGTTGAGACCGAGCACGCGAGCGG
AGGTGAGGAAGAAGGGGTACAAAACGGGAGTCGATGCGGATGAGGCGCGG
CGGCGGAGAGAGGACAATCTGGTGGAGATCAGAAAGAACAAAAGGGAAGA
TAATTTGTTGAAGAAACGACGCGAAGGTCTCCTGCTTCAGCCTCAGCAAC
AACTCCTCGATGCCTCGCAAAACGCCATTGAAAAGAATTTGGAAAGTATT
CCTTCTATGGTACAAGGAGTGTGGTCTGAGGATCCTGCATTACAGTTGGA
AGCAACTACACAGTTTAGAAAGCTGTTATCAATTGAACGCAGCCCTCCAA
TTGATGAAGTAATTAAAGCTGGTGTTGTCCCACGCTTTGTGGAGTTTCTA
GGAAGGCATGATATGCCTCAACTACAATTTGAGGCTGCATGGGCATTGAC
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