CX043932

Overview
NameCX043932
Unique NameCX043932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA1_MOUSE (Importin subunit alpha-1 OS=Mus musculus GN=Kpna1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 8.972e-14
Identity = 50/119 (42.02%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIE---KNLESIPS------MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFEAAWAL 498
            +++RK KRE+ L K+R              +     E    N+E  P       M   ++S  P  QL AT +FRKLLS E +PPIDEVI   GVV RFVEFL R +   LQFE+AW L
Sbjct:   33 LQLRKQKREEQLFKRRNVATAEEETEEEVMSDGGFHEAQINNMEMAPGGVITSDMTDMIFSNSPEQQLSATQKFRKLLSKEPNPPIDEVINTPGVVARFVEFLKRKENCTLQFESAWVL 151          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA3_CAEEL (Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 48/131 (36.64%), Postives = 65/131 (49.62%), Query Frame = 1
Query:  106 RKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            R+  YK               +V IRK+KRE+ + K+R                    + NL  +   V    S DPA QL A  Q RK+LS +R+PPID++I +G++P  V+ L   D P LQFEAAWAL
Sbjct:    5 RQAYYKNNAKEQIGKEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSETSTTPPGPFDANLLRLT--VAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSSTD-PNLQFEAAWAL 132          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA1A_DICDI (Probable importin subunit alpha-A OS=Dictyostelium discoideum GN=DDB_G0273149 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 45/146 (30.82%), Postives = 73/146 (50.00%), Query Frame = 1
Query:   94 RAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKR-----------REGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            + + RKK +K  +           N + IRKN RE+ +LK+R           +                  +E  ++++P +V  + S D A    +  QFRKLLSI   PPID+VI+ G++P+  + L + + P++QFE+AWAL
Sbjct:    6 KQDSRKKEFKKSLDSETARRKREENSIGIRKNAREELMLKRRGIVQPNPSTSYQIIVPPEVQEQFQKYENETMENKIKNLPGLVTALNSNDQAYVYSSLVQFRKLLSIHAYPPIDQVIECGIIPKLNQLL-QCNNPKVQFESAWAL 150          
BLAST of CX043932 vs. ExPASy Swiss-Prot
Match: IMA_DROME (Importin subunit alpha OS=Drosophila melanogaster GN=Pen PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  172 VEIRKNKREDNLLKKRREGXXXXXXXXXXDASQNAIEKNLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 498
            +E+RK+K+ED + K+R                Q+ ++ +++ I   V  + SED   Q       RK+LS ER+PPID +I  G+VP  + FL   +   LQFEAAWAL
Sbjct:   32 IELRKSKKEDQMFKRRNINDEDLTSPLKELNGQSPVQLSVDEI---VAAMNSEDQERQFLGMQSARKMLSRERNPPIDLMIGHGIVPICIRFLQNTNNSMLQFEAAWAL 137          
The following BLAST results are available for this feature:
BLAST of CX043932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
IMA1_MOUSE8.972e-1442.02Importin subunit alpha-1 OS=Mus musculus GN=Kpna1 ... [more]
IMA3_CAEEL1.172e-1336.64Importin subunit alpha-3 OS=Caenorhabditis elegans... [more]
IMA1A_DICDI7.596e-1330.82Probable importin subunit alpha-A OS=Dictyostelium... [more]
IMA_DROME3.191e-1136.70Importin subunit alpha OS=Drosophila melanogaster ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14D03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14D03-H6-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043932 ID=CX043932; Name=CX043932; organism=Citrus sinensis; type=EST; length=500bp
CTCACTCTCCCTTAATCTCTCGTTCATTTCAAGATTTTGTAAAAAAAGCG
GAAGAAAGGCCGAAAGAACGACATGTCGTTGAGACCGAGCACGCGAGCGG
AGGTGAGGAAGAAGGGGTACAAAACGGGAGTCGATGCGGATGAGGCGCGG
CGGCGGAGAGAGGACAATCTGGTGGAGATCAGAAAGAACAAAAGGGAAGA
TAATTTGTTGAAGAAACGACGCGAAGGTCTCCTGCTTCAGCCTCAGCAAC
AACTCCTCGATGCCTCGCAAAACGCCATTGAAAAGAATTTGGAAAGTATT
CCTTCTATGGTACAAGGAGTGTGGTCTGAGGATCCTGCATTACAGTTGGA
AGCAACTACACAGTTTAGAAAGCTGTTATCAATTGAACGCAGCCCTCCAA
TTGATGAAGTAATTAAAGCTGGTGTTGTCCCACGCTTTGTGGAGTTTCTA
GGAAGGCATGATATGCCTCAACTACAATTTGAGGCTGCATGGGCATTGAC
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