CX300734

Overview
NameCX300734
Unique NameCX300734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.118e-54
Identity = 99/142 (69.72%), Postives = 118/142 (83.10%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKP G+R  RK  NHRRE+RW+ K Y KAH  +  KANP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKK+  FVPRDGCLN ++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYK KKE+PRS
Sbjct:    2 GKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.118e-54
Identity = 99/142 (69.72%), Postives = 118/142 (83.10%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKP G+R  RK  NHRRE+RW+ K Y KAH  +  KANP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKK+  FVPRDGCLN ++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYK KKE+PRS
Sbjct:    2 GKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.118e-54
Identity = 99/142 (69.72%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKP GLR  RK ++HRR++RW  K Y KAH  +  KANP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVPRDGCLN+++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYK KKE+PRS
Sbjct:    2 GKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 5.379e-54
Identity = 101/144 (70.14%), Postives = 119/144 (82.64%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKGKP GL + RKL+ HRR  RW+   Y K    +  K++P GGS  +KGIV+EK+G+E+KQPNSAIRK VRVQLIKNGKK+  FVP DGCLNFVDENDEVL++GFG++GK+KGDIPG RFKVVKVSGVSLLAL+K KKEKPRS
Sbjct:    2 GKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 5.379e-54
Identity = 102/142 (71.83%), Postives = 118/142 (83.10%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKP+GL A RKL+NHRREERW+   Y K    +  K++P GGS  +KGIVVEKIG+EAKQPNSAIRK VRVQLIKNGKK+  FVP DGCLNFVDENDEVL+SGFG++GK+KGDIPG RFKVVKV+GV L AL+  KKEKPR+
Sbjct:    2 GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 5.379e-54
Identity = 101/144 (70.14%), Postives = 119/144 (82.64%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKGKP GL + RKL+ HRR  RW+   Y K    +  K++P GGS  +KGIV+EK+G+E+KQPNSAIRK VRVQLIKNGKK+  FVP DGCLNFVDENDEVL++GFG++GK+KGDIPG RFKVVKVSGVSLLAL+K KKEKPRS
Sbjct:    2 GKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 5.379e-54
Identity = 101/144 (70.14%), Postives = 119/144 (82.64%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKGKP GL + RKL+ HRR  RW+   Y K    +  K++P GGS  +KGIV+EK+G+E+KQPNSAIRK VRVQLIKNGKK+  FVP DGCLNFVDENDEVL++GFG++GK+KGDIPG RFKVVKVSGVSLLAL+K KKEKPRS
Sbjct:    2 GKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 5.379e-54
Identity = 101/144 (70.14%), Postives = 119/144 (82.64%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKGKP GL + RKL+ HRR  RW+   Y K    +  K++P GGS  +KGIV+EK+G+E+KQPNSAIRK VRVQLIKNGKK+  FVP DGCLNFVDENDEVL++GFG++GK+KGDIPG RFKVVKVSGVSLLAL+K KKEKPRS
Sbjct:    2 GKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 7.025e-54
Identity = 99/142 (69.72%), Postives = 118/142 (83.10%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKP GL   RKLK HR+E+RW+ K+Y KAH  +  K+NP GG+  +KGIV+EKIG+EAKQPNSAIRK VRVQLIKNGKKI  FVP DGCLNFV+ENDEVL+SGFG+ G + GDIPG RFK+VKV+  SL+AL+KGKKE+PRS
Sbjct:    2 GKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.669e-53
Identity = 99/142 (69.72%), Postives = 118/142 (83.10%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKP GLR  RK  NHRR++RW+ K Y KAH  +  KANP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVPRDG LN+++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYK KKE+PRS
Sbjct:    2 GKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_SPOFR4.118e-5469.7240S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA4.118e-5469.7240S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_DERVA4.118e-5469.7240S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_YEAST5.379e-5470.1440S ribosomal protein S23 OS=Saccharomyces cerevis... [more]
RS23_SCHPO5.379e-5471.8340S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS23_SACCA5.379e-5470.1440S ribosomal protein S23 OS=Saccharomyces castell... [more]
RS23_SACBA5.379e-5470.1440S ribosomal protein S23 OS=Saccharomyces bayanus... [more]
RS23_CANGA5.379e-5470.1440S ribosomal protein S23 OS=Candida glabrata GN=R... [more]
RS23_CAEEL7.025e-5469.7240S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_DROME2.669e-5369.7240S ribosomal protein S23 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC08001F08SK PhyRootSw1 Citrus sinensis cDNA clone C08001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bp
CTCGTGCCGAATTCGGCACGAGGAAAAGGCAAGCCAAGTGGTTTACGCGC
GGGTCGCAAGTTAAAGAACCATCGTCGTGAGGAGAGATGGTCCAGCAAGC
AATACAACAAGGCTCACTCTGTTAGTCACATGAAGGCTAACCCATTAGGT
GGCTCTTGTATGTCTAAGGGTATCGTGGTTGAGAAAATTGGTTTGGAAGC
CAAGCAGCCTAACTCTGCCATTCGTAAGGGTGTTCGTGTGCAATTAATCA
AGAACGGAAAGAAGATCGCTTGCTTCGTTCCTCGTGACGGTTGCTTAAAC
TTCGTTGACGAAAACGACGAAGTTTTAATCTCTGGTTTCGGTAAGCGTGG
TAAATCTAAGGGTGATATTCCGGGATGCCGCTTCAAGGTTGTCAAGGTTT
CTGGTGTTTCATTGTTAGCTTTGTATAAAGGAAAGAAGGAGAAGCCAAGA
TCTTAAATATTATATGGCAATCTGATAATAATAATAACGTTCGCATAACC
GCGCGA
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