CX300734

Overview
NameCX300734
Unique NameCX300734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 3.486e-53
Identity = 96/142 (67.61%), Postives = 118/142 (83.10%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKP G+RA RKLK HR+ +RW+ K Y KAH  +  KANP G +  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVP DGCLNF++ENDEVL++GFG++G + GDIPG RFK+VKV+  SL+AL+KGKKE+PRS
Sbjct:    2 GKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 6.575e-52
Identity = 96/142 (67.61%), Postives = 117/142 (82.39%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  GLR  RKL+NHRRE++W  KQY KAH  + +KANP G +  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVP DGCLNF +ENDEVL++GFG++  + GDIPG RFKVV+++ VSLLALYKG KE+P+S
Sbjct:    2 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 8.587e-52
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  G+ A RKLKNHRR +RW+ K Y K+H  +  K  P  GS  +KGIV+EKIG+EAKQPNSAIRK  RVQLIKNGKKIA FVP DGCLN+++ENDEVLI+GFG++G + GDIPG RFKVVKVSGVSLLAL+K KKEKPRS
Sbjct:    2 GKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.913e-51
Identity = 95/142 (66.90%), Postives = 116/142 (81.69%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKPSGLR  RKL N RR+++W    Y K+H  + +KANP GG+  +KGIV+EKIG+EAKQPNSAIRK VRVQLIKNGKKI  FVP DGCLN+++ENDEVL++GFG+ G + GDIPG RFK+VKV+ VSL AL+ GKKE+PRS
Sbjct:    2 GKPSGLRCARKLXNRRRDQKWHDXXYKKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.262e-51
Identity = 99/142 (69.72%), Postives = 116/142 (81.69%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  G+ A RKLK+HRR +RW+ K Y K+H  +  K  P  GS  +KGIV+EKIG+EAKQPNSAIRK  RVQLIKNGKKIA FVP DGCLN+++ENDEVLI+GFG++G + GDIPG RFKVVKVSGVSLLAL+K KKEKPRS
Sbjct:    2 GKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 3.608e-50
Identity = 99/142 (69.72%), Postives = 115/142 (80.99%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  G+ AGRKLK  R  +RW+ KQY K+H  +  K  P  GS  +KGIV+EKIG+EAKQPNSAIRK  RVQLIKNGKKIA FVP DGCLN+++ENDEVLI+GFG++G + GDIPG RFKVVKVSGVSLLAL+K KKEKPRS
Sbjct:    2 GKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.371e-49
Identity = 91/140 (65.00%), Postives = 113/140 (80.71%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GKP+GL+  RKL+NHRR +RW+ K Y KAH  + +KANP GG+  + GIVV ++G+EAKQPNSAIRK VRVQL KNGKKI  FVP DGCLN++ END+VL++G G+ G S GDIPG RFKVVKVS VSL+A+Y+G K+KP
Sbjct:    2 GKPNGLKTARKLRNHRRVQRWNDKLYKKAHFGTALKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 9.825e-48
Identity = 96/142 (67.61%), Postives = 113/142 (79.58%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  G+ AGRKLK  R  +RW+ K Y K++  +  K  P   S  +KGIV+EKIG+EAKQPNSAIRK  RVQLIKNGKKIA FVP DGCLN+++ENDEVLI+GFG++G + GDIPG RFKVVKVSGVSLLAL+K KKEKPRS
Sbjct:    2 GKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 7.785e-45
Identity = 88/141 (62.41%), Postives = 109/141 (77.30%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444
            G GKP G+RAGRKL  HR+++RW+   +NK    S  + NP  G+  +KG+V EKIG+E+KQPNSA+RK VRV L KN KKIA FVP DGCLNF+ ENDEVL++G G++G + GDIPG RFKVV V G+SLLAL+KGKKEK
Sbjct:    2 GVGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWR-NPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_CENSY (30S ribosomal protein S12P OS=Cenarchaeum symbiosum GN=rps12p PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.984e-40
Identity = 83/140 (59.29%), Postives = 103/140 (73.57%), Query Frame = 1
Query:   34 PSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFG-KRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            P GL AGR LK  ++ +RWS  +Y +       KANP+GGS  ++GIV+EK+G+EAKQPNSA+RK VRVQLIKNGK I  F+PRDG +NF+DE+DEV + G G  +G + GDIPG RFKV KV+G SL  L  GKKEKPR
Sbjct:    5 PLGLFAGRVLKAKKKRQRWSISRYKRRELGLDRKANPMGGSPQARGIVLEKVGVEAKQPNSAVRKCVRVQLIKNGKSITAFLPRDGAMNFIDEHDEVHVEGMGATQGGAMGDIPGVRFKVFKVNGTSLHELVIGKKEKPR 144          
The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_BRUMA3.486e-5367.6140S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_GILMI6.575e-5267.6140S ribosomal protein S23 OS=Gillichthys mirabilis... [more]
RS23_FRAAN8.587e-5270.4240S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_CIOIN1.913e-5166.9040S ribosomal protein S23 OS=Ciona intestinalis GN... [more]
RS23_EUPES4.262e-5169.7240S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH3.608e-5069.7240S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS23_DICDI1.371e-4965.0040S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS231_ARATH9.825e-4867.6140S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS12_TETTH7.785e-4562.4140S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS12_CENSY1.984e-4059.2930S ribosomal protein S12P OS=Cenarchaeum symbiosu... [more]

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Properties
Property NameValue
Genbank descriptionC08001F08SK PhyRootSw1 Citrus sinensis cDNA clone C08001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bp
CTCGTGCCGAATTCGGCACGAGGAAAAGGCAAGCCAAGTGGTTTACGCGC
GGGTCGCAAGTTAAAGAACCATCGTCGTGAGGAGAGATGGTCCAGCAAGC
AATACAACAAGGCTCACTCTGTTAGTCACATGAAGGCTAACCCATTAGGT
GGCTCTTGTATGTCTAAGGGTATCGTGGTTGAGAAAATTGGTTTGGAAGC
CAAGCAGCCTAACTCTGCCATTCGTAAGGGTGTTCGTGTGCAATTAATCA
AGAACGGAAAGAAGATCGCTTGCTTCGTTCCTCGTGACGGTTGCTTAAAC
TTCGTTGACGAAAACGACGAAGTTTTAATCTCTGGTTTCGGTAAGCGTGG
TAAATCTAAGGGTGATATTCCGGGATGCCGCTTCAAGGTTGTCAAGGTTT
CTGGTGTTTCATTGTTAGCTTTGTATAAAGGAAAGAAGGAGAAGCCAAGA
TCTTAAATATTATATGGCAATCTGATAATAATAATAACGTTCGCATAACC
GCGCGA
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