CX300734
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 3.486e-53 Identity = 96/142 (67.61%), Postives = 118/142 (83.10%), Query Frame = 1 Query: 28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453 GKP G+RA RKLK HR+ +RW+ K Y KAH + KANP G + +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI FVP DGCLNF++ENDEVL++GFG++G + GDIPG RFK+VKV+ SL+AL+KGKKE+PRS Sbjct: 2 GKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 6.575e-52 Identity = 96/142 (67.61%), Postives = 117/142 (82.39%), Query Frame = 1 Query: 28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453 GK GLR RKL+NHRRE++W KQY KAH + +KANP G + +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI FVP DGCLNF +ENDEVL++GFG++ + GDIPG RFKVV+++ VSLLALYKG KE+P+S Sbjct: 2 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 8.587e-52 Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 Query: 28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453 GK G+ A RKLKNHRR +RW+ K Y K+H + K P GS +KGIV+EKIG+EAKQPNSAIRK RVQLIKNGKKIA FVP DGCLN+++ENDEVLI+GFG++G + GDIPG RFKVVKVSGVSLLAL+K KKEKPRS Sbjct: 2 GKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 1.913e-51 Identity = 95/142 (66.90%), Postives = 116/142 (81.69%), Query Frame = 1 Query: 28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453 GKPSGLR RKL N RR+++W Y K+H + +KANP GG+ +KGIV+EKIG+EAKQPNSAIRK VRVQLIKNGKKI FVP DGCLN+++ENDEVL++GFG+ G + GDIPG RFK+VKV+ VSL AL+ GKKE+PRS Sbjct: 2 GKPSGLRCARKLXNRRRDQKWHDXXYKKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 4.262e-51 Identity = 99/142 (69.72%), Postives = 116/142 (81.69%), Query Frame = 1 Query: 28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453 GK G+ A RKLK+HRR +RW+ K Y K+H + K P GS +KGIV+EKIG+EAKQPNSAIRK RVQLIKNGKKIA FVP DGCLN+++ENDEVLI+GFG++G + GDIPG RFKVVKVSGVSLLAL+K KKEKPRS Sbjct: 2 GKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2) HSP 1 Score: 197.208 bits (500), Expect = 3.608e-50 Identity = 99/142 (69.72%), Postives = 115/142 (80.99%), Query Frame = 1 Query: 28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453 GK G+ AGRKLK R +RW+ KQY K+H + K P GS +KGIV+EKIG+EAKQPNSAIRK RVQLIKNGKKIA FVP DGCLN+++ENDEVLI+GFG++G + GDIPG RFKVVKVSGVSLLAL+K KKEKPRS Sbjct: 2 GKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 1.371e-49 Identity = 91/140 (65.00%), Postives = 113/140 (80.71%), Query Frame = 1 Query: 28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GKP+GL+ RKL+NHRR +RW+ K Y KAH + +KANP GG+ + GIVV ++G+EAKQPNSAIRK VRVQL KNGKKI FVP DGCLN++ END+VL++G G+ G S GDIPG RFKVVKVS VSL+A+Y+G K+KP Sbjct: 2 GKPNGLKTARKLRNHRRVQRWNDKLYKKAHFGTALKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2) HSP 1 Score: 189.119 bits (479), Expect = 9.825e-48 Identity = 96/142 (67.61%), Postives = 113/142 (79.58%), Query Frame = 1 Query: 28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453 GK G+ AGRKLK R +RW+ K Y K++ + K P S +KGIV+EKIG+EAKQPNSAIRK RVQLIKNGKKIA FVP DGCLN+++ENDEVLI+GFG++G + GDIPG RFKVVKVSGVSLLAL+K KKEKPRS Sbjct: 2 GKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 7.785e-45 Identity = 88/141 (62.41%), Postives = 109/141 (77.30%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444 G GKP G+RAGRKL HR+++RW+ +NK S + NP G+ +KG+V EKIG+E+KQPNSA+RK VRV L KN KKIA FVP DGCLNF+ ENDEVL++G G++G + GDIPG RFKVV V G+SLLAL+KGKKEK Sbjct: 2 GVGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWR-NPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_CENSY (30S ribosomal protein S12P OS=Cenarchaeum symbiosum GN=rps12p PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.984e-40 Identity = 83/140 (59.29%), Postives = 103/140 (73.57%), Query Frame = 1 Query: 34 PSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFG-KRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 P GL AGR LK ++ +RWS +Y + KANP+GGS ++GIV+EK+G+EAKQPNSA+RK VRVQLIKNGK I F+PRDG +NF+DE+DEV + G G +G + GDIPG RFKV KV+G SL L GKKEKPR Sbjct: 5 PLGLFAGRVLKAKKKRQRWSISRYKRRELGLDRKANPMGGSPQARGIVLEKVGVEAKQPNSAVRKCVRVQLIKNGKSITAFLPRDGAMNFIDEHDEVHVEGMGATQGGAMGDIPGVRFKVFKVNGTSLHELVIGKKEKPR 144 The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bpback to top |