CX300734
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 8.337e-39 Identity = 80/143 (55.94%), Postives = 106/143 (74.13%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GK P+GL A RKL+ R + RWS +++ K +PL G+ M++GIV+EK+G+EA+QPNSA+RK VRVQL KNGK + FVP DG +N++DE+DEV+I G G RG+S GDIPG R+KV+ V+GVSL ALY GKK+KP Sbjct: 3 GKKAPNGLFAARKLRRKRLKFRWSQREFKIKMLGLKKKHDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALYLGKKQKP 145
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PICTO (30S ribosomal protein S12P OS=Picrophilus torridus GN=rps12p PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 2.426e-38 Identity = 74/137 (54.01%), Postives = 104/137 (75.91%), Query Frame = 1 Query: 37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444 +GL AG+KL R+ RWS + Y + K++PL G+ +KGIV+EK+G+EAKQPNS IRK V++QLIKNG++++ F P DG +N++DE+DEV++ G G R G+SKGDIPG R+KV+KV+G+SL L KG+KEK Sbjct: 3 NGLNAGKKLMKSRKTYRWSDRDYKRRVLNLKKKSDPLEGAPQAKGIVIEKVGIEAKQPNSGIRKCVKIQLIKNGRQLSAFAPGDGAINYIDEHDEVVVEGIGGRMGRSKGDIPGVRYKVIKVNGISLHELVKGRKEK 139
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 2.426e-38 Identity = 80/144 (55.56%), Postives = 108/144 (75.00%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 GK P+GL A RKL+ R + RWS +++ K +PL G+ M++GIV+EK+G+EA+QPNSA+RK VRVQL+KN K + FVPRDG + +VDE+DEV+I G G RG+S GDIPG R++VV V+GVSL AL++GKK+KPR Sbjct: 3 GKKAPAGLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGDIPGVRYRVVMVNGVSLKALWEGKKQKPR 146
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 3.168e-38 Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 GK P+G AGRKLK R++ RWS +Y + K++PL G+ ++GIV+EKI +EAKQPNS +RK VRVQLIKNGK + F P DG +NF+DE+DEV+I G G +G S GDIPG R+KVVKV+ VSL L KG+KEKPR Sbjct: 3 GKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 5.404e-38 Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 GK P G AGRKLK R++ RWS +Y + K++PL G+ +KGIV+EKI +EAKQPNSA+RK VRVQLIKNGK + F P DG +N +DE+DEV+I G G +G S GDIPG R+KVVKV+ VSL L KG+KEKPR Sbjct: 3 GKKAPYGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METKA (30S ribosomal protein S12P OS=Methanopyrus kandleri GN=rps12p PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 5.404e-38 Identity = 78/143 (54.55%), Postives = 106/143 (74.13%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GK P+G A RKL+ R++ RW ++Y + KA+PL G+ ++GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++ F P DG ++++DE+DEV+I G G +G++KGDIPG R+KVVKV+ V+L L KGK EKP Sbjct: 3 GKKSPAGEFAARKLREKRKKFRWKDERYKRRMLKLDEKADPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAIDYIDEHDEVVIEGIGGPKGRAKGDIPGVRYKVVKVNDVALSELLKGKIEKP 145
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3) HSP 1 Score: 156.377 bits (394), Expect = 7.058e-38 Identity = 77/143 (53.85%), Postives = 105/143 (73.43%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 G P GL A RKL+ R + WS + + + K +PL G+ M++GIV+EK+G+E++QPNSA+RK VRVQL+KNG+ + FVP DG +NF+DE+DEV+I+G G G+S GD+PG R+KVV V+GVSL ALYKGKK+KP Sbjct: 3 GSKSPKGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP 145
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 9.217e-38 Identity = 79/143 (55.24%), Postives = 106/143 (74.13%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GK P GL AG KLK R++ RW+ Y + K +PL G+ M++GIV+EK+G+EA++PN+A+RK VRVQL+KNGK + FVP DG LN+++E+DEV+I G GKS GDIPG RFKVVKV+GVSL A+++GKK+KP Sbjct: 3 GKKSPYGLFAGGKLKKKRQKFRWNDVTYKRRMLGLAEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPYDGGLNYINEHDEVIIERIGGPEGKSLGDIPGVRFKVVKVNGVSLWAIWRGKKQKP 145
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 1.204e-37 Identity = 82/144 (56.94%), Postives = 103/144 (71.53%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 GK P G AGRKLK R++ RWS +Y + K++PL G+ ++GIV+EKI +EAKQPNSA+RK VRVQLIKNGK + F P DG +N +DE+DEV+I G G +G S GDIPG R+KVVKV+ VSL L KG+KEKPR Sbjct: 3 GKKAPYGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.572e-37 Identity = 76/137 (55.47%), Postives = 102/137 (74.45%), Query Frame = 1 Query: 37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444 +GL AGRKL +R++ RWS + Y + K++PL G+ +KGI +EK+G+EAKQPNSAIRK V+VQLIKNG++I F DG +N++DE+DEV + G G R G+SKGDIPG R+KVV V+G+SL L KG+KEK Sbjct: 3 NGLNAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKELVKGRKEK 139 The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bpback to top |