CX300734

Overview
NameCX300734
Unique NameCX300734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 8.337e-39
Identity = 80/143 (55.94%), Postives = 106/143 (74.13%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GK  P+GL A RKL+  R + RWS +++         K +PL G+ M++GIV+EK+G+EA+QPNSA+RK VRVQL KNGK +  FVP DG +N++DE+DEV+I G  G RG+S GDIPG R+KV+ V+GVSL ALY GKK+KP
Sbjct:    3 GKKAPNGLFAARKLRRKRLKFRWSQREFKIKMLGLKKKHDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALYLGKKQKP 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PICTO (30S ribosomal protein S12P OS=Picrophilus torridus GN=rps12p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.426e-38
Identity = 74/137 (54.01%), Postives = 104/137 (75.91%), Query Frame = 1
Query:   37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444
            +GL AG+KL   R+  RWS + Y +       K++PL G+  +KGIV+EK+G+EAKQPNS IRK V++QLIKNG++++ F P DG +N++DE+DEV++ G G R G+SKGDIPG R+KV+KV+G+SL  L KG+KEK
Sbjct:    3 NGLNAGKKLMKSRKTYRWSDRDYKRRVLNLKKKSDPLEGAPQAKGIVIEKVGIEAKQPNSGIRKCVKIQLIKNGRQLSAFAPGDGAINYIDEHDEVVVEGIGGRMGRSKGDIPGVRYKVIKVNGISLHELVKGRKEK 139          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.426e-38
Identity = 80/144 (55.56%), Postives = 108/144 (75.00%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            GK  P+GL A RKL+  R + RWS +++         K +PL G+ M++GIV+EK+G+EA+QPNSA+RK VRVQL+KN K +  FVPRDG + +VDE+DEV+I G  G RG+S GDIPG R++VV V+GVSL AL++GKK+KPR
Sbjct:    3 GKKAPAGLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGDIPGVRYRVVMVNGVSLKALWEGKKQKPR 146          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.168e-38
Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            GK  P+G  AGRKLK  R++ RWS  +Y +       K++PL G+  ++GIV+EKI +EAKQPNS +RK VRVQLIKNGK +  F P DG +NF+DE+DEV+I G  G +G S GDIPG R+KVVKV+ VSL  L KG+KEKPR
Sbjct:    3 GKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.404e-38
Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            GK  P G  AGRKLK  R++ RWS  +Y +       K++PL G+  +KGIV+EKI +EAKQPNSA+RK VRVQLIKNGK +  F P DG +N +DE+DEV+I G  G +G S GDIPG R+KVVKV+ VSL  L KG+KEKPR
Sbjct:    3 GKKAPYGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METKA (30S ribosomal protein S12P OS=Methanopyrus kandleri GN=rps12p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.404e-38
Identity = 78/143 (54.55%), Postives = 106/143 (74.13%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GK  P+G  A RKL+  R++ RW  ++Y +       KA+PL G+  ++GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++  F P DG ++++DE+DEV+I G  G +G++KGDIPG R+KVVKV+ V+L  L KGK EKP
Sbjct:    3 GKKSPAGEFAARKLREKRKKFRWKDERYKRRMLKLDEKADPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAIDYIDEHDEVVIEGIGGPKGRAKGDIPGVRYKVVKVNDVALSELLKGKIEKP 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 7.058e-38
Identity = 77/143 (53.85%), Postives = 105/143 (73.43%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            G   P GL A RKL+  R +  WS + + +       K +PL G+ M++GIV+EK+G+E++QPNSA+RK VRVQL+KNG+ +  FVP DG +NF+DE+DEV+I+G  G  G+S GD+PG R+KVV V+GVSL ALYKGKK+KP
Sbjct:    3 GSKSPKGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.217e-38
Identity = 79/143 (55.24%), Postives = 106/143 (74.13%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GK  P GL AG KLK  R++ RW+   Y +       K +PL G+ M++GIV+EK+G+EA++PN+A+RK VRVQL+KNGK +  FVP DG LN+++E+DEV+I    G  GKS GDIPG RFKVVKV+GVSL A+++GKK+KP
Sbjct:    3 GKKSPYGLFAGGKLKKKRQKFRWNDVTYKRRMLGLAEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPYDGGLNYINEHDEVIIERIGGPEGKSLGDIPGVRFKVVKVNGVSLWAIWRGKKQKP 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.204e-37
Identity = 82/144 (56.94%), Postives = 103/144 (71.53%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            GK  P G  AGRKLK  R++ RWS  +Y +       K++PL G+  ++GIV+EKI +EAKQPNSA+RK VRVQLIKNGK +  F P DG +N +DE+DEV+I G  G +G S GDIPG R+KVVKV+ VSL  L KG+KEKPR
Sbjct:    3 GKKAPYGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.572e-37
Identity = 76/137 (55.47%), Postives = 102/137 (74.45%), Query Frame = 1
Query:   37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444
            +GL AGRKL  +R++ RWS + Y +       K++PL G+  +KGI +EK+G+EAKQPNSAIRK V+VQLIKNG++I  F   DG +N++DE+DEV + G G R G+SKGDIPG R+KVV V+G+SL  L KG+KEK
Sbjct:    3 NGLNAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKELVKGRKEK 139          
The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_STAMF8.337e-3955.9430S ribosomal protein S12P OS=Staphylothermus mari... [more]
RS12_PICTO2.426e-3854.0130S ribosomal protein S12P OS=Picrophilus torridus... [more]
RS12_AERPE2.426e-3855.5630S ribosomal protein S12P OS=Aeropyrum pernix GN=... [more]
RS12_PYRHO3.168e-3856.9430S ribosomal protein S12P OS=Pyrococcus horikoshi... [more]
RS12_THECE5.404e-3857.6430S ribosomal protein S12P OS=Thermococcus celer G... [more]
RS12_METKA5.404e-3854.5530S ribosomal protein S12P OS=Methanopyrus kandler... [more]
RS12_SULAC7.058e-3853.8530S ribosomal protein S12P OS=Sulfolobus acidocald... [more]
RS12_PYRCJ9.217e-3855.2430S ribosomal protein S12P OS=Pyrobaculum calidifo... [more]
RS12_PYRKO1.204e-3756.9430S ribosomal protein S12P OS=Pyrococcus kodakarae... [more]
RS12_THEVO1.572e-3755.4730S ribosomal protein S12P OS=Thermoplasma volcani... [more]

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Properties
Property NameValue
Genbank descriptionC08001F08SK PhyRootSw1 Citrus sinensis cDNA clone C08001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bp
CTCGTGCCGAATTCGGCACGAGGAAAAGGCAAGCCAAGTGGTTTACGCGC
GGGTCGCAAGTTAAAGAACCATCGTCGTGAGGAGAGATGGTCCAGCAAGC
AATACAACAAGGCTCACTCTGTTAGTCACATGAAGGCTAACCCATTAGGT
GGCTCTTGTATGTCTAAGGGTATCGTGGTTGAGAAAATTGGTTTGGAAGC
CAAGCAGCCTAACTCTGCCATTCGTAAGGGTGTTCGTGTGCAATTAATCA
AGAACGGAAAGAAGATCGCTTGCTTCGTTCCTCGTGACGGTTGCTTAAAC
TTCGTTGACGAAAACGACGAAGTTTTAATCTCTGGTTTCGGTAAGCGTGG
TAAATCTAAGGGTGATATTCCGGGATGCCGCTTCAAGGTTGTCAAGGTTT
CTGGTGTTTCATTGTTAGCTTTGTATAAAGGAAAGAAGGAGAAGCCAAGA
TCTTAAATATTATATGGCAATCTGATAATAATAATAACGTTCGCATAACC
GCGCGA
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