CX300734
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.572e-37 Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 GK P+G AGRKLK R++ RWS +Y + K++PL G+ ++GIV+EKI +EAKQPNS +RK VRVQLIKNGK + F P DG + F+DE+DEV+I G G +G S GDIPG R+KVVKV+ VSL L KG+KEKPR Sbjct: 3 GKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.572e-37 Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 GK P+G AGRKLK R++ RWS +Y + K++PL G+ ++GIV+EKI +EAKQPNS +RK VRVQLIKNGK + F P DG + F+DE+DEV+I G G +G S GDIPG R+KVVKV+ VSL L KG+KEKPR Sbjct: 3 GKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.572e-37 Identity = 79/143 (55.24%), Postives = 106/143 (74.13%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GK P+GL A RKL+ R + RWS +++ + K +PL G+ M++GIV+EK+G+EA++PNSA+RK VRVQL+KNGK + FVP DG LN + E+DEV+I G G RG+S GDIPG R+KVV V+GVSL A+ KGKK+KP Sbjct: 3 GKKAPNGLFAARKLERKRLKFRWSQREFKRRMLKLKEKYDPLEGAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGDIPGVRYKVVLVNGVSLDAILKGKKQKP 145
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_THEAC (30S ribosomal protein S12P OS=Thermoplasma acidophilum GN=rps12p PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 2.682e-37 Identity = 75/137 (54.74%), Postives = 102/137 (74.45%), Query Frame = 1 Query: 37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444 +G+ AGRKL +R++ RWS + Y + K++PL G+ +KGI +EK+G+EAKQPNSAIRK V+VQLIKNG++I F DG +N++DE+DEV + G G R G+SKGDIPG R+KVV V+G+SL L KG+KEK Sbjct: 3 NGINAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKELVKGRKEK 139
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 2.682e-37 Identity = 77/143 (53.85%), Postives = 106/143 (74.13%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GK P GL AG KLK R++ RW+ Y + K +PL G+ M++GIV+EK+G+EA++PN+A+RK VRVQL+KNGK + FVP DG LN+++E+DEV+I G G+S GDIPG RFKV+KV+GVSL A+++GKK+KP Sbjct: 3 GKKSPYGLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 3.503e-37 Identity = 74/143 (51.75%), Postives = 106/143 (74.13%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 G P G+ A RKL+ R + RW +++ + K +PL G+ M++G+V+EK+G+E++QPNSA+RK VRVQL+KNG+ + FVP DG +NF+DE+DEV+I+G G G+S GD+PG R+KV+ V+GVSL ALYKGKK+KP Sbjct: 3 GGKSPKGMFAARKLRLKRLKFRWHQRKFKRRMLKLKEKFDPLEGAPMARGVVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 5.975e-37 Identity = 76/143 (53.15%), Postives = 105/143 (73.43%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GK P GL AG KLK R+ +W+ Y + K +PL G+ M++GIV+EK+G+EA++PN+A+RK VRVQL+KNGK + FVP DG LN+++E+DEV+I G G+S GDIPG RFKV+KV+GVSL A+++GKK+KP Sbjct: 3 GKKSPYGLFAGGKLKRKRKRFKWNDITYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVIIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 5.975e-37 Identity = 79/144 (54.86%), Postives = 106/144 (73.61%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 GK P+GL A RKL+ R + RWS +++ K +PL G+ M++GIV+EK+G+EA+QPNSA+RK VRVQLIKNG+ + FVP DG L VDE+DEVLI G G RG+S GDIPG R++VV V+GVSL A+ +G+K+KP+ Sbjct: 3 GKKSPNGLFAARKLRRKRLKFRWSEREFKIRMLGLKKKYDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGDIPGVRYRVVTVNGVSLRAILEGRKQKPQ 146
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METST (30S ribosomal protein S12P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps12p PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 7.803e-37 Identity = 77/137 (56.20%), Postives = 100/137 (72.99%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GL A +KLK++R+ RW QY + ++KA+PL GS ++GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK+I F P DG + F+DE+DEV+I G G G+S GDIPG R+KV KV+ V+L + GK EKP Sbjct: 3 GLFAAKKLKDNRQNFRWKDTQYKRKTLGLNIKADPLEGSPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVTKVNNVALSEMVSGKIEKP 139
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRAR (30S ribosomal protein S12P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps12p PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.019e-36 Identity = 76/143 (53.15%), Postives = 104/143 (72.73%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GK P GL AG KLK R+ +W+ Y + K +PL G+ M++GIV+EK+G+EA++PN+A+RK VRVQL+KNGK + FVP DG LN+++E+DEV+I G G+S GDIPG RFKV+KV+GVSL A++ GKK+KP Sbjct: 3 GKKSPYGLFAGGKLKRKRKRFKWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWSGKKQKP 145 The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bpback to top |