CX300734

Overview
NameCX300734
Unique NameCX300734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.572e-37
Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            GK  P+G  AGRKLK  R++ RWS  +Y +       K++PL G+  ++GIV+EKI +EAKQPNS +RK VRVQLIKNGK +  F P DG + F+DE+DEV+I G  G +G S GDIPG R+KVVKV+ VSL  L KG+KEKPR
Sbjct:    3 GKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.572e-37
Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            GK  P+G  AGRKLK  R++ RWS  +Y +       K++PL G+  ++GIV+EKI +EAKQPNS +RK VRVQLIKNGK +  F P DG + F+DE+DEV+I G  G +G S GDIPG R+KVVKV+ VSL  L KG+KEKPR
Sbjct:    3 GKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.572e-37
Identity = 79/143 (55.24%), Postives = 106/143 (74.13%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GK  P+GL A RKL+  R + RWS +++ +       K +PL G+ M++GIV+EK+G+EA++PNSA+RK VRVQL+KNGK +  FVP DG LN + E+DEV+I G  G RG+S GDIPG R+KVV V+GVSL A+ KGKK+KP
Sbjct:    3 GKKAPNGLFAARKLERKRLKFRWSQREFKRRMLKLKEKYDPLEGAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGDIPGVRYKVVLVNGVSLDAILKGKKQKP 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_THEAC (30S ribosomal protein S12P OS=Thermoplasma acidophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.682e-37
Identity = 75/137 (54.74%), Postives = 102/137 (74.45%), Query Frame = 1
Query:   37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444
            +G+ AGRKL  +R++ RWS + Y +       K++PL G+  +KGI +EK+G+EAKQPNSAIRK V+VQLIKNG++I  F   DG +N++DE+DEV + G G R G+SKGDIPG R+KVV V+G+SL  L KG+KEK
Sbjct:    3 NGINAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKELVKGRKEK 139          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.682e-37
Identity = 77/143 (53.85%), Postives = 106/143 (74.13%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GK  P GL AG KLK  R++ RW+   Y +       K +PL G+ M++GIV+EK+G+EA++PN+A+RK VRVQL+KNGK +  FVP DG LN+++E+DEV+I    G  G+S GDIPG RFKV+KV+GVSL A+++GKK+KP
Sbjct:    3 GKKSPYGLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.503e-37
Identity = 74/143 (51.75%), Postives = 106/143 (74.13%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            G   P G+ A RKL+  R + RW  +++ +       K +PL G+ M++G+V+EK+G+E++QPNSA+RK VRVQL+KNG+ +  FVP DG +NF+DE+DEV+I+G  G  G+S GD+PG R+KV+ V+GVSL ALYKGKK+KP
Sbjct:    3 GGKSPKGMFAARKLRLKRLKFRWHQRKFKRRMLKLKEKFDPLEGAPMARGVVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.975e-37
Identity = 76/143 (53.15%), Postives = 105/143 (73.43%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GK  P GL AG KLK  R+  +W+   Y +       K +PL G+ M++GIV+EK+G+EA++PN+A+RK VRVQL+KNGK +  FVP DG LN+++E+DEV+I    G  G+S GDIPG RFKV+KV+GVSL A+++GKK+KP
Sbjct:    3 GKKSPYGLFAGGKLKRKRKRFKWNDITYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVIIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.975e-37
Identity = 79/144 (54.86%), Postives = 106/144 (73.61%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            GK  P+GL A RKL+  R + RWS +++         K +PL G+ M++GIV+EK+G+EA+QPNSA+RK VRVQLIKNG+ +  FVP DG L  VDE+DEVLI G  G RG+S GDIPG R++VV V+GVSL A+ +G+K+KP+
Sbjct:    3 GKKSPNGLFAARKLRRKRLKFRWSEREFKIRMLGLKKKYDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGDIPGVRYRVVTVNGVSLRAILEGRKQKPQ 146          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METST (30S ribosomal protein S12P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps12p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.803e-37
Identity = 77/137 (56.20%), Postives = 100/137 (72.99%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GL A +KLK++R+  RW   QY +     ++KA+PL GS  ++GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK+I  F P DG + F+DE+DEV+I G  G  G+S GDIPG R+KV KV+ V+L  +  GK EKP
Sbjct:    3 GLFAAKKLKDNRQNFRWKDTQYKRKTLGLNIKADPLEGSPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVTKVNNVALSEMVSGKIEKP 139          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_PYRAR (30S ribosomal protein S12P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps12p PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.019e-36
Identity = 76/143 (53.15%), Postives = 104/143 (72.73%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GK  P GL AG KLK  R+  +W+   Y +       K +PL G+ M++GIV+EK+G+EA++PN+A+RK VRVQL+KNGK +  FVP DG LN+++E+DEV+I    G  G+S GDIPG RFKV+KV+GVSL A++ GKK+KP
Sbjct:    3 GKKSPYGLFAGGKLKRKRKRFKWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWSGKKQKP 145          
The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_PYRFU1.572e-3756.2530S ribosomal protein S12P OS=Pyrococcus furiosus ... [more]
RS12_PYRAB1.572e-3756.2530S ribosomal protein S12P OS=Pyrococcus abyssi GN... [more]
RS12_IGNH41.572e-3755.2430S ribosomal protein S12P OS=Ignicoccus hospitali... [more]
RS12_THEAC2.682e-3754.7430S ribosomal protein S12P OS=Thermoplasma acidoph... [more]
RS12_PYRAE2.682e-3753.8530S ribosomal protein S12P OS=Pyrobaculum aerophil... [more]
RS12_SULTO3.503e-3751.7530S ribosomal protein S12P OS=Sulfolobus tokodaii ... [more]
RS12_PYRIL5.975e-3753.1530S ribosomal protein S12P OS=Pyrobaculum islandic... [more]
RS12_HYPBU5.975e-3754.8630S ribosomal protein S12P OS=Hyperthermus butylic... [more]
RS12_METST7.803e-3756.2030S ribosomal protein S12P OS=Methanosphaera stadt... [more]
RS12_PYRAR1.019e-3653.1530S ribosomal protein S12P OS=Pyrobaculum arsenati... [more]

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Properties
Property NameValue
Genbank descriptionC08001F08SK PhyRootSw1 Citrus sinensis cDNA clone C08001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bp
CTCGTGCCGAATTCGGCACGAGGAAAAGGCAAGCCAAGTGGTTTACGCGC
GGGTCGCAAGTTAAAGAACCATCGTCGTGAGGAGAGATGGTCCAGCAAGC
AATACAACAAGGCTCACTCTGTTAGTCACATGAAGGCTAACCCATTAGGT
GGCTCTTGTATGTCTAAGGGTATCGTGGTTGAGAAAATTGGTTTGGAAGC
CAAGCAGCCTAACTCTGCCATTCGTAAGGGTGTTCGTGTGCAATTAATCA
AGAACGGAAAGAAGATCGCTTGCTTCGTTCCTCGTGACGGTTGCTTAAAC
TTCGTTGACGAAAACGACGAAGTTTTAATCTCTGGTTTCGGTAAGCGTGG
TAAATCTAAGGGTGATATTCCGGGATGCCGCTTCAAGGTTGTCAAGGTTT
CTGGTGTTTCATTGTTAGCTTTGTATAAAGGAAAGAAGGAGAAGCCAAGA
TCTTAAATATTATATGGCAATCTGATAATAATAATAACGTTCGCATAACC
GCGCGA
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