CX300734

Overview
NameCX300734
Unique NameCX300734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.331e-36
Identity = 75/139 (53.96%), Postives = 105/139 (75.54%), Query Frame = 1
Query:   34 PSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            P G+ A RKL+  R + R S ++Y         K +PLGG+ M++GIV+EK+G+E++QPNSA+RK VRVQL++NG+ +  FVP DG +NF+DE+DEV+I+G  G  G+S GD+PG R+KV+ V+GVSL ALYKGKK+KP
Sbjct:    7 PKGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.965e-36
Identity = 76/136 (55.88%), Postives = 102/136 (75.00%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444
            GL A RKL  +R++ RWS +++ +       KA+PL G+ M++GIV+EKIG+EA+QPNSAIRK VRVQLIKNG++I  F P DG +NF+DE+DEV++   G R G+S GDIPG R+KVVKV+  SL  L +G+KEK
Sbjct:    4 GLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGDIPGVRYKVVKVNNTSLRELVRGRKEK 139          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.058e-36
Identity = 75/137 (54.74%), Postives = 99/137 (72.26%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GL A +KLK+ R++ +W    Y +      +KA+PL G+  ++GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK+I  F P DG + F+DE+DEV++ G  G  G+S GDIPG R+KV KV+ VSL  + KGK EKP
Sbjct:    3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTKVNNVSLQEMVKGKIEKP 139          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.127e-35
Identity = 73/139 (52.52%), Postives = 101/139 (72.66%), Query Frame = 1
Query:   34 PSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            P G+ A RK+++  ++ RWS   Y +      +KA+PLGG+  ++GIV+EK+G+EAKQPNSAIRK VR+QLIKNG+++  F P DG + F+DE+DEV++   G R G+S GDIPG RFKVV V+ VSL  +  G+KEKP
Sbjct:    2 PMGINAARKMEDDWKKLRWSDPHYCRRALGLKVKADPLGGAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGFIDEHDEVVVERIGGRMGRSMGDIPGVRFKVVAVNNVSLEEMVSGRKEKP 140          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.278e-35
Identity = 72/143 (50.35%), Postives = 103/143 (72.03%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            G   P G+ A RKL+  R++ RWS  +Y +       K +PL G+  ++GIVVEK+G+E++QPNSA+RK VRVQL+KNGK +  F+P DG L FV+E+DEV+I G  G  G++ GD+PG R+KV+KV+GVSL  + +G+K+KP
Sbjct:    3 GSKSPRGMFAARKLELKRKKFRWSDLEYKRRILQLKKKVDPLEGAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGALLFVNEHDEVVIEGIGGPEGRAYGDLPGVRWKVIKVNGVSLKEILRGRKQKP 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.278e-35
Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = 1
Query:   37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            +G  A RKLK  R++ RWS  +Y +       K++PL G+   +GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++  F P DG ++F+DE+DEV I+G  G +G++ GD+ G  +KV KV+GVSL+ L +G  EKP
Sbjct:    3 NGKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.278e-35
Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = 1
Query:   37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            +G  A RKLK  R++ RWS  +Y +       K++PL G+   +GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++  F P DG ++F+DE+DEV I+G  G +G++ GD+ G  +KV KV+GVSL+ L +G  EKP
Sbjct:    3 NGKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.303e-35
Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            +G  A RKLK      RW    Y +      +KA+PL G+   +GIV+EK+G+EAKQPNSAIRK VRVQLIKNG+++  F   DG +NF+DE+DEV I G G R G+SKGDIPG RF V KV+ VSL  +  G+KEKPR
Sbjct:    3 NGKFAARKLKRDANNNRWHDTGYARRQLGLDVKADPLEGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSKGDIPGVRFVVTKVNNVSLREMVTGRKEKPR 141          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.303e-35
Identity = 80/143 (55.94%), Postives = 102/143 (71.33%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQY-NKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444
            G   P G  AGRKL   RR  RW   +Y NKA S+  +KA+PL G+ M +GIVVEK+GLEAKQPNSAIRK VRVQLIKNG+++  F P +  +NF+DE+DEV+I G  G  G++KGDIPG R+KVV V   S+  L +G++EK
Sbjct:    3 GSKSPKGEFAGRKLLLKRRASRWHHYKYVNKALSLK-LKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.539e-35
Identity = 72/138 (52.17%), Postives = 98/138 (71.01%), Query Frame = 1
Query:   37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            +G  A RKLK  R++ RWS   Y +       K++PL G+   +GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++  F P DG ++F+DE+DEV I+G  G +G++ GD+ G  +KV KV+GVSL+ L +G  EKP
Sbjct:    3 NGKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_SULSO1.331e-3653.9630S ribosomal protein S12P OS=Sulfolobus solfatari... [more]
RS12_ARCFU2.965e-3655.8830S ribosomal protein S12P OS=Archaeoglobus fulgid... [more]
RS12_METTH5.058e-3654.7430S ribosomal protein S12P OS=Methanobacterium the... [more]
RS12_METTP1.127e-3552.5230S ribosomal protein S12P OS=Methanosaeta thermop... [more]
RS12_THEPD3.278e-3550.3530S ribosomal protein S12P OS=Thermofilum pendens ... [more]
RS12_HALWD3.278e-3552.1730S ribosomal protein S12P OS=Haloquadratum walsby... [more]
RS12_HALSA3.278e-3552.1730S ribosomal protein S12P OS=Halobacterium salina... [more]
RS12_METMJ7.303e-3554.6830S ribosomal protein S12P OS=Methanoculleus maris... [more]
RS12_METM77.303e-3555.9430S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_HALMA9.539e-3552.1730S ribosomal protein S12P OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionC08001F08SK PhyRootSw1 Citrus sinensis cDNA clone C08001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bp
CTCGTGCCGAATTCGGCACGAGGAAAAGGCAAGCCAAGTGGTTTACGCGC
GGGTCGCAAGTTAAAGAACCATCGTCGTGAGGAGAGATGGTCCAGCAAGC
AATACAACAAGGCTCACTCTGTTAGTCACATGAAGGCTAACCCATTAGGT
GGCTCTTGTATGTCTAAGGGTATCGTGGTTGAGAAAATTGGTTTGGAAGC
CAAGCAGCCTAACTCTGCCATTCGTAAGGGTGTTCGTGTGCAATTAATCA
AGAACGGAAAGAAGATCGCTTGCTTCGTTCCTCGTGACGGTTGCTTAAAC
TTCGTTGACGAAAACGACGAAGTTTTAATCTCTGGTTTCGGTAAGCGTGG
TAAATCTAAGGGTGATATTCCGGGATGCCGCTTCAAGGTTGTCAAGGTTT
CTGGTGTTTCATTGTTAGCTTTGTATAAAGGAAAGAAGGAGAAGCCAAGA
TCTTAAATATTATATGGCAATCTGATAATAATAATAACGTTCGCATAACC
GCGCGA
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