CX300734
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2) HSP 1 Score: 152.14 bits (383), Expect = 1.331e-36 Identity = 75/139 (53.96%), Postives = 105/139 (75.54%), Query Frame = 1 Query: 34 PSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 P G+ A RKL+ R + R S ++Y K +PLGG+ M++GIV+EK+G+E++QPNSA+RK VRVQL++NG+ + FVP DG +NF+DE+DEV+I+G G G+S GD+PG R+KV+ V+GVSL ALYKGKK+KP Sbjct: 7 PKGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 2.965e-36 Identity = 76/136 (55.88%), Postives = 102/136 (75.00%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444 GL A RKL +R++ RWS +++ + KA+PL G+ M++GIV+EKIG+EA+QPNSAIRK VRVQLIKNG++I F P DG +NF+DE+DEV++ G R G+S GDIPG R+KVVKV+ SL L +G+KEK Sbjct: 4 GLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGDIPGVRYKVVKVNNTSLRELVRGRKEK 139
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 5.058e-36 Identity = 75/137 (54.74%), Postives = 99/137 (72.26%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GL A +KLK+ R++ +W Y + +KA+PL G+ ++GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK+I F P DG + F+DE+DEV++ G G G+S GDIPG R+KV KV+ VSL + KGK EKP Sbjct: 3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTKVNNVSLQEMVKGKIEKP 139
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 1.127e-35 Identity = 73/139 (52.52%), Postives = 101/139 (72.66%), Query Frame = 1 Query: 34 PSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 P G+ A RK+++ ++ RWS Y + +KA+PLGG+ ++GIV+EK+G+EAKQPNSAIRK VR+QLIKNG+++ F P DG + F+DE+DEV++ G R G+S GDIPG RFKVV V+ VSL + G+KEKP Sbjct: 2 PMGINAARKMEDDWKKLRWSDPHYCRRALGLKVKADPLGGAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGFIDEHDEVVVERIGGRMGRSMGDIPGVRFKVVAVNNVSLEEMVSGRKEKP 140
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.278e-35 Identity = 72/143 (50.35%), Postives = 103/143 (72.03%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 G P G+ A RKL+ R++ RWS +Y + K +PL G+ ++GIVVEK+G+E++QPNSA+RK VRVQL+KNGK + F+P DG L FV+E+DEV+I G G G++ GD+PG R+KV+KV+GVSL + +G+K+KP Sbjct: 3 GSKSPRGMFAARKLELKRKKFRWSDLEYKRRILQLKKKVDPLEGAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGALLFVNEHDEVVIEGIGGPEGRAYGDLPGVRWKVIKVNGVSLKEILRGRKQKP 145
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.278e-35 Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = 1 Query: 37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 +G A RKLK R++ RWS +Y + K++PL G+ +GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++ F P DG ++F+DE+DEV I+G G +G++ GD+ G +KV KV+GVSL+ L +G EKP Sbjct: 3 NGKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.278e-35 Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = 1 Query: 37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 +G A RKLK R++ RWS +Y + K++PL G+ +GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++ F P DG ++F+DE+DEV I+G G +G++ GD+ G +KV KV+GVSL+ L +G EKP Sbjct: 3 NGKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 7.303e-35 Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 1 Query: 37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 +G A RKLK RW Y + +KA+PL G+ +GIV+EK+G+EAKQPNSAIRK VRVQLIKNG+++ F DG +NF+DE+DEV I G G R G+SKGDIPG RF V KV+ VSL + G+KEKPR Sbjct: 3 NGKFAARKLKRDANNNRWHDTGYARRQLGLDVKADPLEGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSKGDIPGVRFVVTKVNNVSLREMVTGRKEKPR 141
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 7.303e-35 Identity = 80/143 (55.94%), Postives = 102/143 (71.33%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQY-NKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444 G P G AGRKL RR RW +Y NKA S+ +KA+PL G+ M +GIVVEK+GLEAKQPNSAIRK VRVQLIKNG+++ F P + +NF+DE+DEV+I G G G++KGDIPG R+KVV V S+ L +G++EK Sbjct: 3 GSKSPKGEFAGRKLLLKRRASRWHHYKYVNKALSLK-LKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 9.539e-35 Identity = 72/138 (52.17%), Postives = 98/138 (71.01%), Query Frame = 1 Query: 37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 +G A RKLK R++ RWS Y + K++PL G+ +GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++ F P DG ++F+DE+DEV I+G G +G++ GD+ G +KV KV+GVSL+ L +G EKP Sbjct: 3 NGKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140 The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bpback to top |