CX300734
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.246e-34 Identity = 72/138 (52.17%), Postives = 98/138 (71.01%), Query Frame = 1 Query: 37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 +G A RKLK R++ RWS Y + K++PL G+ +GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++ F P DG ++F+DE+DEV I+G G +G++ GD+ G +KV KV+GVSL+ L +G EKP Sbjct: 3 NGKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.246e-34 Identity = 73/137 (53.28%), Postives = 97/137 (70.80%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GL A +KLK +R+ +W Y + +KA+PL G+ ++GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++ F P DG + F+DE+DEV+I G G G+S GDIPG R+KV KV+ V+L + GK EKP Sbjct: 3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVSKVNNVALSEMVSGKIEKP 139
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.627e-34 Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQY-NKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444 G P G AGRKL R+ RW +Y NKA S+ +KA+PL G+ M +GIVVEK+GLEAKQPNSAIRK VRVQLIKNG+++ F P + +NF+DE+DEV+I G G G++KGDIPG R+KVV V S+ L +G++EK Sbjct: 3 GSKSPKGEFAGRKLLLKRKASRWHHYKYVNKALSLK-LKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.627e-34 Identity = 78/145 (53.79%), Postives = 102/145 (70.34%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQY-NKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 G P G AGRK+ R+E RW +Y NKA + K++PLGG+ M +GIVVEK+GLEAKQPNSAIRK V+VQLIKNG+ + F P + +NF+DE+DEV+I G G G++KGDIPG RF+VV V S+ L +G++EK R Sbjct: 3 GSKSPKGEFAGRKIVLKRKESRWHHYKYVNKALKLKE-KSDPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMRELVRGRQEKVR 146
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 2.775e-34 Identity = 78/143 (54.55%), Postives = 102/143 (71.33%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQY-NKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444 G P G AGRKL R+ RW +Y NKA S+ +KA+PL G+ M +GIV+EK+GLEAKQPNSAIRK VRVQLIKNG+++ F P + +NF+DE+DEV+I G G G++KGDIPG R+KVV V S+ L +G++EK Sbjct: 3 GSKSPKGEFAGRKLLLKRKASRWHHYKYVNKALSLK-LKADPLEGAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIRELVRGRQEK 144
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 6.183e-34 Identity = 75/137 (54.74%), Postives = 97/137 (70.80%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 G A RKL + R+ RWS + Y + KA+PL G+ +KGIV+EK+G+EAKQPNSAIRK +R+QLIKNG++I F P DG +NF+DE+DEV I G G R G S GDIPG RF+V KV+ VSL + GK++KP Sbjct: 4 GKFACRKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.055e-33 Identity = 74/142 (52.11%), Postives = 97/142 (68.31%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444 G P G AGRKL R+ RW +Y +KA+PLGG+ M +GIVVEK+GLEAKQPNSAIRK V+VQLIKNG+ + F P + +NF+DE+DEV+I G G G++KGDIPG R+KV+ V S+ L +G++EK Sbjct: 3 GSKSPKGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIRELVRGRQEK 144
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.055e-33 Identity = 73/138 (52.90%), Postives = 95/138 (68.84%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 G A LK R++ RW Y + ++KA+PLGG+ +GIV+EK+G+EAKQPNSAIRK VRVQLIKNG+++ F P DG +NF+DE+DEV + G R G + GDIPG RFKV+ V+ VSL L G+ EKPR Sbjct: 4 GKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.377e-33 Identity = 73/136 (53.68%), Postives = 92/136 (67.65%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 GL + L R+ +R + Y K + K + LG + +K IV+EKIG+EAKQPNSAIRK VR QLI GKKI FVP DG + +++ NDEV + GFGK+G+S GDIPG RFKV KV VSL A++ GKKEKP Sbjct: 3 GLFSANNLIKSRKAKRLADTAYRKRALGTKYKHSVLGRAPQAKAIVLEKIGVEAKQPNSAIRKAVRCQLIATGKKITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIFTGKKEKP 138
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.377e-33 Identity = 70/140 (50.00%), Postives = 97/140 (69.29%), Query Frame = 1 Query: 34 PSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 P+G A +L+ R++ RW Y++ +K++PL G+ +GIV+EK+G+EAKQPNSAIRK VR+QLIKNG++ F P DG +NF+DE+DEV + G R G + GDIPG RFKV+ V+ VSL + G+KEKPR Sbjct: 2 PNGKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141 The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bpback to top |