CX300734

Overview
NameCX300734
Unique NameCX300734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.246e-34
Identity = 72/138 (52.17%), Postives = 98/138 (71.01%), Query Frame = 1
Query:   37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            +G  A RKLK  R++ RWS   Y +       K++PL G+   +GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++  F P DG ++F+DE+DEV I+G  G +G++ GD+ G  +KV KV+GVSL+ L +G  EKP
Sbjct:    3 NGKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.246e-34
Identity = 73/137 (53.28%), Postives = 97/137 (70.80%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GL A +KLK +R+  +W    Y +      +KA+PL G+  ++GIV+EK+G+EAKQPNSAIRK VRVQLIKNGK++  F P DG + F+DE+DEV+I G  G  G+S GDIPG R+KV KV+ V+L  +  GK EKP
Sbjct:    3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVSKVNNVALSEMVSGKIEKP 139          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.627e-34
Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQY-NKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444
            G   P G  AGRKL   R+  RW   +Y NKA S+  +KA+PL G+ M +GIVVEK+GLEAKQPNSAIRK VRVQLIKNG+++  F P +  +NF+DE+DEV+I G  G  G++KGDIPG R+KVV V   S+  L +G++EK
Sbjct:    3 GSKSPKGEFAGRKLLLKRKASRWHHYKYVNKALSLK-LKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.627e-34
Identity = 78/145 (53.79%), Postives = 102/145 (70.34%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQY-NKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            G   P G  AGRK+   R+E RW   +Y NKA  +   K++PLGG+ M +GIVVEK+GLEAKQPNSAIRK V+VQLIKNG+ +  F P +  +NF+DE+DEV+I G  G  G++KGDIPG RF+VV V   S+  L +G++EK R
Sbjct:    3 GSKSPKGEFAGRKIVLKRKESRWHHYKYVNKALKLKE-KSDPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMRELVRGRQEKVR 146          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.775e-34
Identity = 78/143 (54.55%), Postives = 102/143 (71.33%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQY-NKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444
            G   P G  AGRKL   R+  RW   +Y NKA S+  +KA+PL G+ M +GIV+EK+GLEAKQPNSAIRK VRVQLIKNG+++  F P +  +NF+DE+DEV+I G  G  G++KGDIPG R+KVV V   S+  L +G++EK
Sbjct:    3 GSKSPKGEFAGRKLLLKRKASRWHHYKYVNKALSLK-LKADPLEGAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIRELVRGRQEK 144          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.183e-34
Identity = 75/137 (54.74%), Postives = 97/137 (70.80%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            G  A RKL + R+  RWS + Y +       KA+PL G+  +KGIV+EK+G+EAKQPNSAIRK +R+QLIKNG++I  F P DG +NF+DE+DEV I G G R G S GDIPG RF+V KV+ VSL  +  GK++KP
Sbjct:    4 GKFACRKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.055e-33
Identity = 74/142 (52.11%), Postives = 97/142 (68.31%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444
            G   P G  AGRKL   R+  RW   +Y        +KA+PLGG+ M +GIVVEK+GLEAKQPNSAIRK V+VQLIKNG+ +  F P +  +NF+DE+DEV+I G  G  G++KGDIPG R+KV+ V   S+  L +G++EK
Sbjct:    3 GSKSPKGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIRELVRGRQEK 144          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.055e-33
Identity = 73/138 (52.90%), Postives = 95/138 (68.84%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            G  A   LK  R++ RW    Y +     ++KA+PLGG+   +GIV+EK+G+EAKQPNSAIRK VRVQLIKNG+++  F P DG +NF+DE+DEV +   G R G + GDIPG RFKV+ V+ VSL  L  G+ EKPR
Sbjct:    4 GKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.377e-33
Identity = 73/136 (53.68%), Postives = 92/136 (67.65%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            GL +   L   R+ +R +   Y K    +  K + LG +  +K IV+EKIG+EAKQPNSAIRK VR QLI  GKKI  FVP DG + +++ NDEV + GFGK+G+S GDIPG RFKV KV  VSL A++ GKKEKP
Sbjct:    3 GLFSANNLIKSRKAKRLADTAYRKRALGTKYKHSVLGRAPQAKAIVLEKIGVEAKQPNSAIRKAVRCQLIATGKKITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIFTGKKEKP 138          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.377e-33
Identity = 70/140 (50.00%), Postives = 97/140 (69.29%), Query Frame = 1
Query:   34 PSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            P+G  A  +L+  R++ RW    Y++      +K++PL G+   +GIV+EK+G+EAKQPNSAIRK VR+QLIKNG++   F P DG +NF+DE+DEV +   G R G + GDIPG RFKV+ V+ VSL  +  G+KEKPR
Sbjct:    2 PNGKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141          
The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_NATPD1.246e-3452.1730S ribosomal protein S12P OS=Natronomonas pharaon... [more]
RS12_METS31.246e-3453.2830S ribosomal protein S12P OS=Methanobrevibacter s... [more]
RS12_METM51.627e-3455.2430S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_META31.627e-3453.7930S ribosomal protein S12P OS=Methanococcus aeolic... [more]
RS12_METMP2.775e-3454.5530S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_UNCMA6.183e-3454.7430S ribosomal protein S12P OS=Uncultured methanoge... [more]
RS12_METVS1.055e-3352.1130S ribosomal protein S12P OS=Methanococcus vannie... [more]
RS12_METAC1.055e-3352.9030S ribosomal protein S12P OS=Methanosarcina aceti... [more]
RS23_ENCCU1.377e-3353.6840S ribosomal protein S23 OS=Encephalitozoon cunic... [more]
RS12_METBU1.377e-3350.0030S ribosomal protein S12P OS=Methanococcoides bur... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08001F08SK PhyRootSw1 Citrus sinensis cDNA clone C08001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bp
CTCGTGCCGAATTCGGCACGAGGAAAAGGCAAGCCAAGTGGTTTACGCGC
GGGTCGCAAGTTAAAGAACCATCGTCGTGAGGAGAGATGGTCCAGCAAGC
AATACAACAAGGCTCACTCTGTTAGTCACATGAAGGCTAACCCATTAGGT
GGCTCTTGTATGTCTAAGGGTATCGTGGTTGAGAAAATTGGTTTGGAAGC
CAAGCAGCCTAACTCTGCCATTCGTAAGGGTGTTCGTGTGCAATTAATCA
AGAACGGAAAGAAGATCGCTTGCTTCGTTCCTCGTGACGGTTGCTTAAAC
TTCGTTGACGAAAACGACGAAGTTTTAATCTCTGGTTTCGGTAAGCGTGG
TAAATCTAAGGGTGATATTCCGGGATGCCGCTTCAAGGTTGTCAAGGTTT
CTGGTGTTTCATTGTTAGCTTTGTATAAAGGAAAGAAGGAGAAGCCAAGA
TCTTAAATATTATATGGCAATCTGATAATAATAATAACGTTCGCATAACC
GCGCGA
back to top