CX300734

Overview
NameCX300734
Unique NameCX300734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.799e-33
Identity = 72/138 (52.17%), Postives = 95/138 (68.84%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            G  A   LK  R++ RW    Y +     ++KA+PLGG+   +GIV+EK+G+EAKQPNSAIRK VR+QLIKNG+++  F P DG +NF+DE+DEV +   G R G + GDIPG RFKV+ V+ VSL  L  G+ EKPR
Sbjct:    4 GKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRLEKPR 141          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.349e-33
Identity = 75/138 (54.35%), Postives = 94/138 (68.12%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            G  A RKLK      RWS   + +      +K++PL G+   +GIV+EKIG+EAKQPNSAIRK VRVQLIKNG++++ F   DG +NF+DE+DEV I G G R G+S GDIPG RF V KV+ V L  L  G+KEKPR
Sbjct:    4 GKFAARKLKRDSARFRWSDPHFARTAGGLKLKSDPLEGAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRFVVTKVNNVCLHELVIGRKEKPR 141          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.166e-32
Identity = 72/138 (52.17%), Postives = 95/138 (68.84%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            G  A RKL    ++ RWS K Y +      +K++PL G+  ++GIV+EK+G+EAKQPNSAIRK VRVQLIKNG+++  F   DG +NF+DE+DEV I G G R G+S GDIPG R+ V  V+ V L  +  G+KEKPR
Sbjct:    4 GKFAARKLVRDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.989e-32
Identity = 70/138 (50.72%), Postives = 93/138 (67.39%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            G  A   LK  R+  RW    Y +     ++KA+PLGG+   +GIV+EK+G+EAKQPNSAIRK VR+QLIKNG+++  F P DG +NF+DE+DEV +   G R G + GDIPG RF+V  V+ VSL  +  G+ EKPR
Sbjct:    4 GKYAANILKQTRKNARWKDTSYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFRVTAVNNVSLNQMVIGRLEKPR 141          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.989e-32
Identity = 69/138 (50.00%), Postives = 95/138 (68.84%), Query Frame = 1
Query:   37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447
            +G  A RKLK  R+  RWS  +Y +       K + L G+   +GIV+EK+G+EAKQPNSAIRK VRVQLIKNG+++  F P DG ++F+DE+DEV I+G  G +G++ GD+    +KV KV+GVSL+ L +G  EKP
Sbjct:    3 NGKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.684e-31
Identity = 72/143 (50.35%), Postives = 96/143 (67.13%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFG--KRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444
            G   P G  AGRKL+  R+  RW    Y +       K +PL G+ M++GIV+EK+GLEAKQPNSAIRK VRVQLIKNG+ +  F P +  +NF+DE+DEV+I G G  K  ++KGDIPG ++KV+ V   SL  L +G++EK
Sbjct:    3 GSKSPRGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLRELVRGRQEK 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.899e-31
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = 1
Query:   40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            G  A R L    ++ RWS   Y++      +KA+PL G+ + + IV+EK+G+EAKQPNSAIRK VRVQLIKNG+++  F   DG +NF+DE+DEV I G G R G+S GDIPG RF V  V+GVSL  L  G+ EK R
Sbjct:    4 GKFAARNLVRTAKKFRWSDSVYSRRALKLKLKADPLEGAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVTICGIGGRAGRSMGDIPGVRFVVSGVNGVSLNELVIGRAEKAR 141          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.058e-29
Identity = 71/140 (50.71%), Postives = 92/140 (65.71%), Query Frame = 1
Query:   34 PSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450
            P+GL AGRKLK  R++ RW+  +Y +       K +PL G+ M+ GIV+EK  +E +QPNS   K VRVQL KNGK +  F P DG +  +DE+DEVLI G  G++G+S GDIPG R+KV  V+G  L  L KGK EK R
Sbjct:    3 PNGLFAGRKLKKIRKKFRWNDYRYVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPLELLRKGKIEKAR 142          
The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_METMA1.799e-3352.1730S ribosomal protein S12P OS=Methanosarcina mazei... [more]
RS12_METHJ2.349e-3354.3530S ribosomal protein S12P OS=Methanospirillum hun... [more]
RS12_METB61.166e-3252.1730S ribosomal protein S12P OS=Methanoregula boonei... [more]
RS12_METBF1.989e-3250.7230S ribosomal protein S12P OS=Methanosarcina barke... [more]
RS12_HALMO1.989e-3250.0030S ribosomal protein S12P OS=Halococcus morrhuae ... [more]
RS12_METJA1.684e-3150.3530S ribosomal protein S12P OS=Methanocaldococcus j... [more]
RS12_METLZ4.899e-3152.1730S ribosomal protein S12P OS=Methanocorpusculum l... [more]
RS12_NANEQ2.058e-2950.7130S ribosomal protein S12P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionC08001F08SK PhyRootSw1 Citrus sinensis cDNA clone C08001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bp
CTCGTGCCGAATTCGGCACGAGGAAAAGGCAAGCCAAGTGGTTTACGCGC
GGGTCGCAAGTTAAAGAACCATCGTCGTGAGGAGAGATGGTCCAGCAAGC
AATACAACAAGGCTCACTCTGTTAGTCACATGAAGGCTAACCCATTAGGT
GGCTCTTGTATGTCTAAGGGTATCGTGGTTGAGAAAATTGGTTTGGAAGC
CAAGCAGCCTAACTCTGCCATTCGTAAGGGTGTTCGTGTGCAATTAATCA
AGAACGGAAAGAAGATCGCTTGCTTCGTTCCTCGTGACGGTTGCTTAAAC
TTCGTTGACGAAAACGACGAAGTTTTAATCTCTGGTTTCGGTAAGCGTGG
TAAATCTAAGGGTGATATTCCGGGATGCCGCTTCAAGGTTGTCAAGGTTT
CTGGTGTTTCATTGTTAGCTTTGTATAAAGGAAAGAAGGAGAAGCCAAGA
TCTTAAATATTATATGGCAATCTGATAATAATAATAACGTTCGCATAACC
GCGCGA
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