CX300734
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.799e-33 Identity = 72/138 (52.17%), Postives = 95/138 (68.84%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 G A LK R++ RW Y + ++KA+PLGG+ +GIV+EK+G+EAKQPNSAIRK VR+QLIKNG+++ F P DG +NF+DE+DEV + G R G + GDIPG RFKV+ V+ VSL L G+ EKPR Sbjct: 4 GKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRLEKPR 141
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.349e-33 Identity = 75/138 (54.35%), Postives = 94/138 (68.12%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 G A RKLK RWS + + +K++PL G+ +GIV+EKIG+EAKQPNSAIRK VRVQLIKNG++++ F DG +NF+DE+DEV I G G R G+S GDIPG RF V KV+ V L L G+KEKPR Sbjct: 4 GKFAARKLKRDSARFRWSDPHFARTAGGLKLKSDPLEGAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRFVVTKVNNVCLHELVIGRKEKPR 141
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.166e-32 Identity = 72/138 (52.17%), Postives = 95/138 (68.84%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 G A RKL ++ RWS K Y + +K++PL G+ ++GIV+EK+G+EAKQPNSAIRK VRVQLIKNG+++ F DG +NF+DE+DEV I G G R G+S GDIPG R+ V V+ V L + G+KEKPR Sbjct: 4 GKFAARKLVRDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.989e-32 Identity = 70/138 (50.72%), Postives = 93/138 (67.39%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 G A LK R+ RW Y + ++KA+PLGG+ +GIV+EK+G+EAKQPNSAIRK VR+QLIKNG+++ F P DG +NF+DE+DEV + G R G + GDIPG RF+V V+ VSL + G+ EKPR Sbjct: 4 GKYAANILKQTRKNARWKDTSYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFRVTAVNNVSLNQMVIGRLEKPR 141
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.989e-32 Identity = 69/138 (50.00%), Postives = 95/138 (68.84%), Query Frame = 1 Query: 37 SGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKP 447 +G A RKLK R+ RWS +Y + K + L G+ +GIV+EK+G+EAKQPNSAIRK VRVQLIKNG+++ F P DG ++F+DE+DEV I+G G +G++ GD+ +KV KV+GVSL+ L +G EKP Sbjct: 3 NGKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 1.684e-31 Identity = 72/143 (50.35%), Postives = 96/143 (67.13%), Query Frame = 1 Query: 22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFG--KRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEK 444 G P G AGRKL+ R+ RW Y + K +PL G+ M++GIV+EK+GLEAKQPNSAIRK VRVQLIKNG+ + F P + +NF+DE+DEV+I G G K ++KGDIPG ++KV+ V SL L +G++EK Sbjct: 3 GSKSPRGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLRELVRGRQEK 145
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 4.899e-31 Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = 1 Query: 40 GLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKR-GKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 G A R L ++ RWS Y++ +KA+PL G+ + + IV+EK+G+EAKQPNSAIRK VRVQLIKNG+++ F DG +NF+DE+DEV I G G R G+S GDIPG RF V V+GVSL L G+ EK R Sbjct: 4 GKFAARNLVRTAKKFRWSDSVYSRRALKLKLKADPLEGAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVTICGIGGRAGRSMGDIPGVRFVVSGVNGVSLNELVIGRAEKAR 141
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.058e-29 Identity = 71/140 (50.71%), Postives = 92/140 (65.71%), Query Frame = 1 Query: 34 PSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGF-GKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPR 450 P+GL AGRKLK R++ RW+ +Y + K +PL G+ M+ GIV+EK +E +QPNS K VRVQL KNGK + F P DG + +DE+DEVLI G G++G+S GDIPG R+KV V+G L L KGK EK R Sbjct: 3 PNGLFAGRKLKKIRKKFRWNDYRYVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPLELLRKGKIEKAR 142 The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bpback to top |