DR908994

Overview
NameDR908994
Unique NameDR908994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPA---WGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L   P  ++A + M ++DTLSTHSPDEEYLG+  +     W  D    AA   F   ++  E  I+ RN++   +NR GAG++PYELL P S PG T +GVP
Sbjct:  812 LNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPPGVTCRGVP 913          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.345e-17
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L+   +++Q +  + +++ LSTHS DE YLG+     W  +     AFEKF  K++E+E  ID+RN +E L+NRTG   +PY LL P S  G TG+G+P
Sbjct:  756 LKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDSKEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIP 854          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEME-PAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L+    K   + D+ I++ LS H+ DE+YLG+ +E   W  D V K AF++F +K+ E+E  +  RN++E+LRNR G   +PY LL P S  G T +G+P
Sbjct:  762 LRTITPKNDTLTDLTIIEVLSRHASDEQYLGERIEGDDWTTDSVPKEAFKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEEGLTCRGIP 861          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.756e-15
Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L+   +++Q +  + +++ LS H+ DE YLG+   P W  D    AAFE+F  K+ ++E  I  RN N  L NRTG    PY LL P S  G TGKG+P
Sbjct:  757 LKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEGGLTGKGIP 855          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.756e-15
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L+    K Q + D+ +++ LS H+ DE YLG+   P W  D     AF++F  K+ ++E  + +RN++E LRNR G   +PY LL P S  G T +G+P
Sbjct:  754 LKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIP 852          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.013e-14
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L+    K Q + D+ +++ LS H+ DE YLG+   P W  D     AF+KF  K+ E+E  +  RN++E LRNR G   +PY LL P S  G T +G+P
Sbjct:  758 LKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKEGLTFRGIP 856          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L+    K + + D+ +++ LS H+ DE YLG+   P W  D     AF++F  K+  +EG I+ RNS+ +LRNRTG   +PY LL   S  G T KG+P
Sbjct:  761 LRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIP 859          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L+    K Q + D+ +++ LS H+ DE YLG+   P W  D     AF+KF  K+ E+E  + ++N++ +L +R G   +PY LL P S  G T +G+P
Sbjct:  761 LRTITPKFQTLIDLSVIEILSRHASDEVYLGQRENPHWTSDSKALQAFQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKEGLTFRGIP 859          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L+   +++Q +  + +++ LS H+ DE YLG+   P W  D    AAF++F +K+ ++E  I  RN +  L NR+G    PY LL P S  G TGKG+P
Sbjct:  758 LKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIP 856          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L+   SK Q + D+ +++ LS H+ DE YLG+   P W  D     AF+KF  K++E+E  +  +N++++L NR G   +PY LL P +  G T +G+P
Sbjct:  763 LRTITSKFQTLVDLSVIEILSRHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHP-NSEGLTCRGIP 860          
The following BLAST results are available for this feature:
BLAST of DR908994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
LOX6_ORYSJ3.720e-1744.12Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX1_ARATH6.345e-1742.42Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX1_LENCU3.482e-1541.00Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOXA_SOLLC7.756e-1541.41Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX3_SOYBN7.756e-1538.38Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX3_PEA1.013e-1440.40Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOXX_SOYBN2.947e-1440.40Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX2_PEA1.463e-1336.36Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX1_SOLTU1.463e-1338.38Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX2_SOYBN2.495e-1337.37Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_17122 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908994 ID=DR908994; Name=DR908994; organism=Citrus sinensis; type=EST; length=553bp
CACTTTTGCAATGCTTTCCTTCAAAGATGCAAGCTATGCAAGATATGGTC
ATTCTGGATACGCTGTCGACTCATTCGCCTGATGAGGAGTATTTGGGGAA
GGAAATGGAGCCCGCCTGGGGTGATGACCCAGTTATAAAGGCTGCATTTG
AAAAGTTTAATCGCAAGATGCAGGAGCTTGAAGGGATCATTGATGACAGA
AATTCGAATGAGAATTTGAGGAACAGAACTGGGGCTGGGATCGTGCCATA
TGAGCTCTTGAAGCCATTTTCGGGACCTGGTGCAACAGGAAAAGGAGTTC
CGTACAGCATCTCCATCTAGAGTGCGCAAAGCTCATTGCAAATAAAACTT
TAAGAAATAAAATGTCACTTTTGTTTAACCTAAATAAGTTCCGCTTGTCC
GAACTTTTTCAAGCAAGCACAACACCAAAACTTTCAGCGAGCTCATTGCA
CAGTTTTGGTAGTTTACGTTTGTATTTTATGTTGCATGTGAGTCCTATCC
ACGATATTATGTTATGATACTAATGTAAAAGTCAAGCAAAATATTAAATT
TTT
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