DR908987

Overview
NameDR908987
Unique NameDR908987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_CHAVU (30S ribosomal protein S19, chloroplastic OS=Chara vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.990e-34
Identity = 64/88 (72.73%), Postives = 79/88 (89.77%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKK PF+ANHLL+K+  LN +A+K++I+TWSR STIIP+M+GHTIAIHNGREH+PI+ITD+MVGHKLGEF+ T  FRGHAKND +SRR
Sbjct:    5 LKKGPFIANHLLKKVHILNLEAQKKVILTWSRGSTIIPSMIGHTIAIHNGREHIPIFITDQMVGHKLGEFSATRTFRGHAKNDKKSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_CHAGL (30S ribosomal protein S19, chloroplastic OS=Chaetosphaeridium globosum GN=rps19 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.990e-34
Identity = 62/88 (70.45%), Postives = 78/88 (88.64%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            +KK PFVA+HL++KI+ LN K EK++IITWSRASTI+P M+GHTIA+HNGREHLP+++TDRMVG KLGEF+PT  FRGH K+D +SRR
Sbjct:    5 IKKGPFVADHLIKKIENLNAKGEKKVIITWSRASTIVPMMIGHTIAVHNGREHLPVFVTDRMVGQKLGEFSPTRTFRGHVKSDKKSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_DIOEL (30S ribosomal protein S19, chloroplastic OS=Dioscorea elephantipes GN=rps19 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.599e-34
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKKNPFV +HL  KI+KLN + EKEII+TWSR STIIP M+GHTIAIHNG+EH PIYITD+MVGHKLGEF+PT+ F  H +NDN+SRR
Sbjct:    5 LKKNPFVVDHLSGKIEKLNMREEKEIIVTWSRGSTIIPAMMGHTIAIHNGKEHFPIYITDQMVGHKLGEFSPTLTFARHTRNDNKSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_ANGEV (30S ribosomal protein S19, chloroplastic OS=Angiopteris evecta GN=rps19 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.599e-34
Identity = 66/88 (75.00%), Postives = 79/88 (89.77%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKK PFVANHLLRKI+ LN + EK+II+T SRASTI+PTM+GHTIA++NG+EHLPIYITDRM+GHKLGEF PT  FRGHA++D +SRR
Sbjct:    5 LKKGPFVANHLLRKIENLNLRKEKKIIVTRSRASTIVPTMIGHTIAVYNGQEHLPIYITDRMIGHKLGEFVPTRIFRGHARSDKKSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_ANTFO (30S ribosomal protein S19, chloroplastic OS=Anthoceros formosae GN=rps19 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.434e-34
Identity = 67/88 (76.14%), Postives = 78/88 (88.64%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKK PFVA HLL KI+ LN K EK+II+TWSRASTI+PTM+GHTIA++NG+EHLPIYITDRMVGHKLGEFA T  F+GHAK+D +SRR
Sbjct:    5 LKKGPFVAYHLLEKIEDLNIKREKKIIVTWSRASTIVPTMIGHTIAVYNGQEHLPIYITDRMVGHKLGEFALTRVFKGHAKSDKKSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_MESVI (30S ribosomal protein S19, chloroplastic OS=Mesostigma viride GN=rps19 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.791e-34
Identity = 64/88 (72.73%), Postives = 77/88 (87.50%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKK PFVA+HLL+KI+ LN K EK++I TWSR STI+P M+GHTIA+HNGREHLPI+ITD+MVGHKLGEF+PT  FRGH K+D +SRR
Sbjct:    5 LKKGPFVADHLLKKIEFLNVKKEKKVITTWSRGSTILPIMIGHTIAVHNGREHLPIFITDQMVGHKLGEFSPTRTFRGHTKSDKKSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_CHLVU (30S ribosomal protein S19, chloroplastic OS=Chlorella vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.791e-34
Identity = 61/88 (69.32%), Postives = 78/88 (88.64%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKK PFVANHLL K+++LNT+ +K++I TWSR+STI+P M+GHTIA+HNGREH+P++ITD+MVGHKLGEFAPT  FRGH K D +S+R
Sbjct:    5 LKKAPFVANHLLEKVERLNTQGDKKVIKTWSRSSTIVPLMIGHTIAVHNGREHIPVFITDQMVGHKLGEFAPTRTFRGHVKKDKKSKR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RS19_CYAP7 (30S ribosomal protein S19 OS=Cyanothece sp. (strain PCC 7424) GN=rpsS PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.877e-34
Identity = 64/88 (72.73%), Postives = 79/88 (89.77%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKK PFVA+HLL KI+KLN K EK++I TWSRASTIIP MVGHTIA+HNG++H+PI+I+++MVGHKLGEFAPT  FRGHAK+D ++RR
Sbjct:    5 LKKGPFVADHLLSKIEKLNEKGEKQVIKTWSRASTIIPDMVGHTIAVHNGKQHVPIFISEQMVGHKLGEFAPTRTFRGHAKSDKKARR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_NEPOL (30S ribosomal protein S19, chloroplastic OS=Nephroselmis olivacea GN=rps19 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.290e-33
Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKK PFVANHLLRKI+K+N K EK +I TWSRASTIIP M+GHTIAIHNG+ HLPI+I DRM+GHKLGEF  T N+RGH K D ++RR
Sbjct:    5 LKKGPFVANHLLRKIEKMNGKGEKHVITTWSRASTIIPIMIGHTIAIHNGKSHLPIFINDRMIGHKLGEFVLTRNYRGHGKTDKKARR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_CHLAT (30S ribosomal protein S19, chloroplastic OS=Chlorokybus atmophyticus GN=rps19 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.753e-33
Identity = 61/88 (69.32%), Postives = 77/88 (87.50%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKK PFVA+HLL+KI+ LN + EK++I TWSR STI+P M+GHTIA++NGREHLPI++TD+MVGHKLGEF+PT  FRGH K+D +SRR
Sbjct:    5 LKKGPFVADHLLKKIEYLNARREKQVITTWSRGSTIVPIMIGHTIAVYNGREHLPIFVTDQMVGHKLGEFSPTRTFRGHVKSDKKSRR 92          
The following BLAST results are available for this feature:
BLAST of DR908987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_CHAVU1.990e-3472.7330S ribosomal protein S19, chloroplastic OS=Chara ... [more]
RR19_CHAGL1.990e-3470.4530S ribosomal protein S19, chloroplastic OS=Chaeto... [more]
RR19_DIOEL2.599e-3473.8630S ribosomal protein S19, chloroplastic OS=Diosco... [more]
RR19_ANGEV2.599e-3475.0030S ribosomal protein S19, chloroplastic OS=Angiop... [more]
RR19_ANTFO4.434e-3476.1430S ribosomal protein S19, chloroplastic OS=Anthoc... [more]
RR19_MESVI5.791e-3472.7330S ribosomal protein S19, chloroplastic OS=Mesost... [more]
RR19_CHLVU5.791e-3469.3230S ribosomal protein S19, chloroplastic OS=Chlore... [more]
RS19_CYAP79.877e-3472.7330S ribosomal protein S19 OS=Cyanothece sp. (strai... [more]
RR19_NEPOL1.290e-3372.7330S ribosomal protein S19, chloroplastic OS=Nephro... [more]
RR19_CHLAT3.753e-3369.3230S ribosomal protein S19, chloroplastic OS=Chloro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_17115 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-26_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908987 ID=DR908987; Name=DR908987; organism=Citrus sinensis; type=EST; length=554bp
ATTTTTTTCTTCGTTTTTACAATTTACAAAAAAAAAAGAAAAAAATAGGA
GTTAATTAACTGTGACACGTTCACCTAAAAAAAAATCCTTTTGTAGCGAA
TCATTTATTAAGAAAAATCGATAAGCTTAATACAAAAGCGGAAAAAGAAA
TAATAATAACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGC
CATACTATTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAAC
AGATCGTATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATT
TCCGTGGACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAA
TATAGATTCATTGGTGAGAGGTGAACCTTATGATAAGGATAATAAAGAAG
AAGGGAGAAGTATCTGCTTTAGGTCAACATATATTGTATGTCTGCTCACA
AAGCCCGAAGGGTAATTGATCAGATTCGGGGACGTTCTTACGAGGAAACC
CTTATGATACTCGAACTCATGCCTTATCGAGCATGTTATCCCATTTTAAA
TTGG
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