DR908981

Overview
NameDR908981
Unique NameDR908981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.702e-15
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 2
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 361
            S A+ T+ +FGIR+   I+C VT+RG+ A + LE+ +K+ E ++  R F   G F FGI+EH D  G  YDP  GI+G+D  VVL+                 ++  VT EDA  + + +Y
Sbjct:   43 SVAKQTLPAFGIRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTDYPGQSYDPKVGIFGLDVTVVLKRNGVRIARRHIQQKKLPLKQLVTVEDAKLFLKDRY 163          
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL5_METJA (50S ribosomal protein L5P OS=Methanocaldococcus jannaschii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.610e-15
Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 2
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE---LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAM----KWFQVKYEGVILNKSQ 388
            ++A+ T  SFGIR+   I   VT+RG KA + L++  +  + E   L   +F D G F FGI EHID  G KYDP  GI+GMD  V LE                  +HR+T+E+A+    K F VK E V+L + +
Sbjct:   51 TRAKQTNPSFGIRKKLPIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRVKRRKRCRAKIPRRHRLTREEAIEFIEKTFGVKVERVLLEEEE 187          
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL5_METST (50S ribosomal protein L5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.902e-14
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 2
Query:    8 ARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVI 373
            ++ T   FGIR+ + IAC VT+RG+KA +++   L   E  +    F   G   FGI+EHID+ G+KYDP  GI+GMD  V  +                    RVTKE++M++ +  +   I
Sbjct:   45 SKVTNPEFGIRKKQPIACKVTLRGEKADKIISMVLSGLENRIKASQFDKEGNVSFGIREHIDIPGVKYDPDIGIFGMDVSVTFQKPGHRIKERRLRPKKLPQAQRVTKEESMEYMKENFNVTI 167          
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 46/129 (35.66%), Postives = 66/129 (51.16%), Query Frame = 2
Query:    8 ARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL---KVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 382
            A+ T  +FGIR+   I   VT+RG KA + L++     K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   53 AKQTNPAFGIRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGYRVKSRKVKRSHIPEKHLVTKDEAIEYIQAKFDTEVVRE 181          
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL5_METB6 (50S ribosomal protein L5P OS=Methanoregula boonei (strain 6A8) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 43/121 (35.54%), Postives = 61/121 (50.41%), Query Frame = 2
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 361
            S A+ T  +F IR+   I C VT+RG  A   +++ L +    +    F  +G F FGI+EH D  G+ YDP  GI+GMD  VVLE                  + RV KEDA+ + + +Y
Sbjct:   40 SVAKMTQPAFNIRKGAPIGCKVTLRGKPAEDFIKTSLNIVNKTIFESQFDKSGNFSFGIEEHTDFPGMSYDPQIGIFGMDINVVLERNGIRITRRRMQKKKLPEKQRVKKEDAIAFLKKEY 160          
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 2
Query:    5 KARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE-XXXXXXXXXXXXXXXXXIQHRVTKEDAM 340
            KA+ T+R+FG+R+ E IA  VT+RG+KA+  L+  L    + +   +  + G   FGI+EHI + G+KYDP  GI GMD  + ++                   +HRVT+E+ M
Sbjct:   67 KAKRTIRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRIVERRRQRRGHIPRRHRVTREETM 180          
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL5_PYRAE (50S ribosomal protein L5P OS=Pyrobaculum aerophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 2
Query:    5 KARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 352
            +A+ +++ FGIR+ E I   VT+R D+A+  L   L+     + + +F D G   FGI+EHI L G+KYDP+ GI+GMD  V L                   +  VTKE+A+++FQ
Sbjct:   55 RAKKSIKDFGIRKGEPIGVAVTLRRDQAVNFLMRALQAVNNRVKKTSFDDRGNVCFGIKEHILLPGVKYDPAVGIWGMDVCVKLAKPGLRVQLRRRRRSKVGKRQLVTKEEAIEFFQ 171          
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 41/120 (34.17%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    8 ARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 364
            ++ T   FGIR+ + IAC VT+RG++A ++L+  L+     L    F + G    GI EHID+ G+KYDP  GI+GM+  V  E                  +HRV++E+A+++ + K++
Sbjct:   45 SKVTNPEFGIRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRINRRRIQRRKVPQKHRVSREEAIEFMKEKFQ 164          
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL5_METS3 (50S ribosomal protein L5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.529e-13
Identity = 40/116 (34.48%), Postives = 63/116 (54.31%), Query Frame = 2
Query:    8 ARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 352
            ++ T   FGIR+ + IAC +T+RG+KA + +E  L+     +    F   G   FGI+EHID+ G+KY+P  GI+GM+  V  E                  +HR++KE+ MK+ +
Sbjct:   45 SKVTNPEFGIRKRQPIACKLTLRGEKADKAIEMVLEGINKNIKPTQFDAQGNLSFGIKEHIDIPGMKYNPDIGIFGMNVSVTFEKPGYRIAKRRIQQKKVPAKHRISKEETMKYME 160          
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL5_METKA (50S ribosomal protein L5P OS=Methanopyrus kandleri GN=rpl5p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 42/126 (33.33%), Postives = 69/126 (54.76%), Query Frame = 2
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 376
            ++A+ T  SFGIRR + I   V +R ++A++ L+  L   + EL    F + G   FG++EHI L G++YDP  GI+GMD  V LE                  +HR+TKE+ + + + +++  +L
Sbjct:   60 TRAKQTNPSFGIRRGQPIGVKVDLRREQAIEFLDWTLDAVDRELHESQFDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRVMRRRRCRRPVPRRHRLTKEEGIVFMEEEFDVEVL 185          
The following BLAST results are available for this feature:
BLAST of DR908981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL5_METHJ2.702e-1537.1950S ribosomal protein L5P OS=Methanospirillum hung... [more]
RL5_METJA4.610e-1538.6950S ribosomal protein L5P OS=Methanocaldococcus ja... [more]
RL5_METST3.902e-1434.9650S ribosomal protein L5P OS=Methanosphaera stadtm... [more]
RL5_METMP5.096e-1435.6650S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METB65.096e-1435.5450S ribosomal protein L5P OS=Methanoregula boonei ... [more]
RL5_AERPE1.483e-1335.9650S ribosomal protein L5P OS=Aeropyrum pernix GN=r... [more]
RL5_PYRAE1.937e-1336.7550S ribosomal protein L5P OS=Pyrobaculum aerophilu... [more]
RL5_METTH1.937e-1334.1750S ribosomal protein L5P OS=Methanobacterium ther... [more]
RL5_METS32.529e-1334.4850S ribosomal protein L5P OS=Methanobrevibacter sm... [more]
RL5_METKA3.303e-1333.3350S ribosomal protein L5P OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_17109 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908981 ID=DR908981; Name=DR908981; organism=Citrus sinensis; type=EST; length=555bp
CTCCAAGGCGAGATACACTGTGAGGTCATTCGGAATCAGGCGTAACGAGA
AGATTGCTTGTTACGTTACGGTTAGAGGAGACAAGGCAATGCAGCTTCTG
GAGAGCGGTTTGAAGGTCAAGGAGTACGAGCTCCTGCGGCGTAACTTCAG
CGATACCGGCTGCTTCGGCTTTGGCATTCAGGAGCACATCGATCTCGGAA
TCAAGTATGACCCTTCCACAGGTATTTATGGCATGGACTTCTTTGTTGTC
CTTGAACGCCCTGGATACCGTGTTGGTCGTCGCCGCAGATGCAAGTCTCG
CGTTGGCATCCAACATAGAGTTACAAAGGAGGATGCCATGAAATGGTTTC
AAGTGAAATATGAAGGAGTTATCCTTAACAAGTCCCAAAACATTGGTGCT
TAAGGCGATCTTTGAAACCTGTTGAGTTTTTTTTTTTCCCTTAAGTTTTG
GGCAGCTGCCCGATTTTTGTTTATTAGAATCTATATTTTCCTTTGGAGTT
TTGAGTTGGTGGATTTTTTTAAGCACAATTTGCCGTGGTTGCCCTGTTCT
TTTAA
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