CN189869

Overview
NameCN189869
Unique NameCN189869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_YERPB (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = -3
Query:  203 VRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 631
            V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  216 VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPAGI---GEHAVVQIRNREMPVRVTKPGFV 357          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_YERPA (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = -3
Query:  203 VRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 631
            V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  216 VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPAGI---GEHAVVQIRNREMPVRVTKPGFV 357          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_YERP3 (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = -3
Query:  203 VRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 631
            V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  216 VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPAGI---GEHAVVQIRNREMPVRVTKPGFV 357          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_SHELP (Aminomethyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 57/172 (33.14%), Postives = 83/172 (48.26%), Query Frame = -3
Query:  203 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWA----------IGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 688
            P   A  L +A+L+     V+  GLGARD+LRLEAG+ LYG DM++ V P+ A + W           IG+   A     G +K++  + E   V R G     P   + +   ++Q    G ITSG FSP L  +IAM  V + +   G   ++E+R K     +    FV
Sbjct:  200 PEAEAEALWQALLDNG---VKPCGLGARDTLRLEAGMNLYGQDMDESVNPLAANMGWTIAWEPEDRDFIGREALAAIKAAGTDKLVGLVMEAKGVLRTGM----PVFFTDADGVEQQ----GAITSGTFSPTLGYSIAMARVPNSV---GDVAEVEMRKKRVPVKVIAPSFV 357          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_SACD2 (Aminomethyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 50/140 (35.71%), Postives = 69/140 (49.29%), Query Frame = -3
Query:  203 GLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 619
            GLGARD+LRLEAG+ LYG++M+ + +P+ A + W I  +   E  F+G E I  +   G   + VG         R+   V  E     G ITSG FSP L K++A+  V        T   + VR K     + K  FV
Sbjct:  221 GLGARDTLRLEAGMNLYGHEMDDNTSPLVANMAWTIAWQPE-ERNFIGREAISAEKAAGVTHKLVGLVLQDRGVLRAEQVVTCEGVEGEGVITSGTFSPTLSKSVALARVPVAFSGECT---VAVRNKQLKALVVKPSFV 356          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_SHEPA (Aminomethyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 57/166 (34.34%), Postives = 79/166 (47.59%), Query Frame = -3
Query:  203 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 688
            P++ A  L +A L+     ++  GLGARD+LRLEAG+ LYG DM++ V P+ A + W +     AE  F G + + K   EG   + VG          H       D  G    G ITSG FSP L  +IAM  V   +   G   ++E+R K     +    FV
Sbjct:  200 PNDEAEALWQAFLDAG---IKPCGLGARDTLRLEAGMNLYGLDMDESVNPLAANMGWTVA-WEPAERDFNGRQALEKIKAEGTD-KLVGLIMDAKGVIRHGMSVFFTDSDGVEQQGTITSGTFSPTLGYSIAMARVPRSI---GDVAEVEMRKKRVPVKVIAPSFV 357          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_MYCTU (Aminomethyltransferase OS=Mycobacterium tuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = -3
Query:  194 GLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLH-KAGTKVKIEVRGKAYDGNITKMPFVPTK 619
            GLGARD+LR E G  L+G+++   ++P++A   WA+G R+ A   F G   +L +   GP     G    G                +G  TSG FSP L+  I +  + S    + G ++ ++VRG+A +  +   PFV  K
Sbjct:  226 GLGARDTLRTEMGYPLHGHELSLDISPLQARCGWAVGWRKDA---FFGRAALLAEKAAGPRRLLRGLRMVGRGVLRPGLAVLVGDETVGVTTSGTFSPTLQVGIGLALIDSDAGIEDGQQINVDVRGRAVECQVVCPPFVAVK 365          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_MYCBO (Aminomethyltransferase OS=Mycobacterium bovis GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = -3
Query:  194 GLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLH-KAGTKVKIEVRGKAYDGNITKMPFVPTK 619
            GLGARD+LR E G  L+G+++   ++P++A   WA+G R+ A   F G   +L +   GP     G    G                +G  TSG FSP L+  I +  + S    + G ++ ++VRG+A +  +   PFV  K
Sbjct:  226 GLGARDTLRTEMGYPLHGHELSLDISPLQARCGWAVGWRKDA---FFGRAALLAEKAAGPRRLLRGLRMVGRGVLRPGLAVLVGDETVGVTTSGTFSPTLQVGIGLALIDSDAGIEDGQQINVDVRGRAVECQVVCPPFVAVK 365          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_SHEON (Aminomethyltransferase OS=Shewanella oneidensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 57/166 (34.34%), Postives = 80/166 (48.19%), Query Frame = -3
Query:  203 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 688
            P   A  L +A+L++    V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W I      +  F+G  K L+ L +    + VG          H       D  G    G ITSG FSP L  +IAM  V S +   G   ++E+R K     +    FV
Sbjct:  200 PETEAEALWQALLDQG---VKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIA-WEPTDRDFIG-RKALEALRDAGTDKLVGLVMEEKGVLRHDMPVFFTDAAGVEQQGVITSGTFSPTLGYSIAMARVPSSI---GDTAEVEMRKKRVAVRVVAPNFV 357          
The following BLAST results are available for this feature:
BLAST of CN189869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 319
Match NameE-valueIdentityDescription
GCST_YERPB2.149e-1132.88Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPA2.149e-1132.88Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERP32.149e-1132.88Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_SHELP2.149e-1133.14Aminomethyltransferase OS=Shewanella loihica (stra... [more]
GCST_SACD22.149e-1135.71Aminomethyltransferase OS=Saccharophagus degradans... [more]
GCST_SHEPA3.665e-1134.34Aminomethyltransferase OS=Shewanella pealeana (str... [more]
GCST_MYCTU3.665e-1131.47Aminomethyltransferase OS=Mycobacterium tuberculos... [more]
GCST_MYCBO3.665e-1131.47Aminomethyltransferase OS=Mycobacterium bovis GN=g... [more]
GCST_SHEON8.165e-1134.34Aminomethyltransferase OS=Shewanella oneidensis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I18_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189869 ID=CN189869; Name=CN189869; organism=Citrus sinensis; type=EST; length=690bp
TTTTTTTTTTTTGCTTTAAGTAAACACTTTTATTCAGGCAACAAGAATCA
TAAGAATTTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCG
AGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTC
CATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTT
GGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAAC
CTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATC
CCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATT
TCTCCAATGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGC
AGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGT
CAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTC
CTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTG
TTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGAC
TGTCTCGAGCACCGAGACCTGTCAACCTCACCTTTCCTTCAGATTTCTCC
AGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
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