CN189836

Overview
NameCN189836
Unique NameCN189836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = -2 
Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.885e-31
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = -2 
Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTI LEVES DTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.885e-31
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = -2 
Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = -2 
Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVE+ DTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = -2 
Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVE+ DTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = -2 
Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITL+VE  DTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -2 
Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -2 
Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVE  DTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -2 
Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVE  DTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = -2 
Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVE  DTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CN189836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
UBIQ_ACECL1.444e-3194.37Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYCR1.885e-3195.77Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_ACACA1.885e-3195.77Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY2.462e-3194.37Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL2.462e-3194.37Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_EUPEU3.216e-3194.37Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_AGLNE3.216e-3194.37Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA4.200e-3194.37Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR4.200e-3194.37Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_RAT4.200e-3194.37Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189836 ID=CN189836; Name=CN189836; organism=Citrus sinensis; type=EST; length=691bp
TTTTTTTTTTTTTTTTTACCAATGAAAGTGAAAAATTTATTGGGTGCCTT
TACATCAGTGTAAGAAAATAGTAGATTCACGCAAGTTATAATAAAGTGCT
CAATGTCACGGCACATAGAGGCGAGTAATCAGTCTACAAATACTCTCAAA
ACCCTGGAAACATCTTGAAACAGAAATCACGTACTAAGTGACAACTATTA
CTGGGCAATAGTTGATGCTACATATTCTAGGCAAAACATCCTGTTTCAGT
ATAAAATGTAGCATTTCTCTGCAGAATATCTACTTGATCTTCTTCTTTGG
CCTTAGCTGGTTGCTGTGCCCACATTTCTTCTTCCTGCAGTTCACGGCAC
GGGGGTGCAGGCGTGCATAACATTTTCGGCAGATCATCTTGTCCTGGTTA
TACTTCCTTGCCAATGCCATCAAAGAAGGCTCAATAATACCGCCACGAAG
CCTCAGAACCAGATGCAGAGTTGACTCCTTTTGGATATTGTAATCGGCTA
GAGTACGGCCATCCTCAAGTTGCTTCCCAGCGAAGATAAGTCTCTGCTGG
TCCGGCGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGAT
GGTGTCCCTGGATTCGACCTCGAGGGTAATGGTCTTCCCCGTTAGGGTTT
TTCACGAAAGATCTGCATTTTTTTCCCCCTTTTTCTCCTCC
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