CN189795

Overview
NameCN189795
Unique NameCN189795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189795 vs. ExPASy Swiss-Prot
Match: PLEC1_RAT (Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:   58 ATMIIPEKNRKEICKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 354
            A M++P    + I + LF+EGV  AKKD    + HP +  V NLQV++ M S K+R  VRETFAW H+YWYLTN+GI+ LR YL+LP EIVPA+L++  +P
Sbjct:    3 AGMLMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRP 103
[Close]
BLAST of CN189795 vs. ExPASy Swiss-Prot
Match: PLEC1_MOUSE (Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:   58 ATMIIPEKNRKEICKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 354
            A M++P    + I + LF+EGV  AKKD    + HP +  V NLQV++ M S K+R  VRETFAW H+YWYLTN+GI+ LR YL+LP EIVPA+L++  +P
Sbjct:    3 AGMLMPLDRLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRP 103
[Close]
BLAST of CN189795 vs. ExPASy Swiss-Prot
Match: PLEC1_HUMAN (Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.536e-21
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   58 ATMIIPEKNRKEICKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 354
            A M++P    + I + LF+EGV  AKKD    + HP +  V NLQV++ M S ++R  VRETFAW H+YWYLTN+GI  LR YL+LP EIVPA+L++  +P
Sbjct:    3 AGMLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRP 103
The following BLAST results are available for this feature:
BLAST of CN189795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PLEC1_RAT1.139e-2152.48Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1 SV=2[more]
PLEC1_MOUSE1.139e-2152.48Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2[more]
PLEC1_HUMAN2.536e-2151.49Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189795 ID=CN189795; Name=CN189795; organism=Citrus sinensis; type=EST; length=730bp
GAGGCCATTCGTTCCTCGCGCAGCTTGACAGAAAGGGCTAAGCTCAATCT
TCACTTCGCAACCATGATTATTCCAGAGAAGAACCGCAAAGAAATCTGCA
AGTACCTCTTCCAAGAGGGAGTATGCTATGCAAAGAAGGATTATAATCTT
GCGAAGCACCCAGAAATCGATGTTCCAAACCTGCAGGTGATTAAGCTGAT
GCAGAGCTTCAAATCTAGGGAGTATGTTCGTGAGACATTTGCGTGGATGC
ACTATTATTGGTACCTTACGAATGATGGGATTGAGTTTTTGAGGACTTAC
CTCAATCTTCCATCAGAAATTGTTCCTGCTACCTTGAAGAAATCCGCTAA
GCCAGCTGGTCGCCCGATGGGTGGACCTGGTGGTGATCGTCCAAGGGGCC
CACCTCGTTTTGATGGAGACCGACCGAGGTTTGGTGACCGTGAAGGGTAC
CGTGGTGGTCCTCGTGGTGGTGACTTTGGTGGTGAGAAAGGTGGAGCCCC
TGCTGATTTCCAGCCATCCTTCAGGGGTTCTGGTGGAAGACCTGGTTTTG
GTCGCGGAGGTGGAGGCTATGGTGCAGCTCCATCAGGTTCAGGATTTCCT
TGAAGTTAAGGCCGGTTTGCTTAGTTCATGTTTGCCCCAAATTAGTGTTT
CAAGTCTTTAGAACAAGTCTAATGCCTTTGTTGAATTTTCTATAGTATTT
CTGTAAGCTTTAAGGTACCAATAATTAAGT
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