CN189792

Overview
NameCN189792
Unique NameCN189792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.589e-29
Identity = 62/132 (46.97%), Postives = 85/132 (64.39%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSS---SQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 737
            N+ PGTVV  K+CHP  +DFYLC+HAG+ GTSRP HYHVL+DE  F++D +Q L ++L Y Y R T ++S+V P  YAHLAA +   +++ E + +  S        T+ G V V  LP L+E V   MF+C
Sbjct:  857 NILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGSPGKKNTKTTTVGDVGVKPLPALKENVKRVMFYC 988          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.589e-29
Identity = 65/138 (47.10%), Postives = 90/138 (65.22%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFE--DLSETSSSQGGMTS-------AGPVPVPQLPRLQEKVCNSMFFC 737
            N+ PGTVV +K+CHP  +DF+LC+HAG+ GTSRP HYHVL+DE  F++D LQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+ +  D    +S +GG +S       AG   V  LP L++ V N MF+C
Sbjct:  901 NILPGTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMESDSSDSGSMASGRGGGSSTSRSTRAAGGGAVRPLPALKDSVKNVMFYC 1038          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.382e-29
Identity = 64/131 (48.85%), Postives = 89/131 (67.94%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSE--TSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 737
            N+ PGTVV  K+CHP  +DFYL +HAG+ GTSRP HYHVL DE GF++D+LQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+ E +S+  +S S+   T  G V + QLP +++ V   MF+C
Sbjct:  869 NIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESE-MSDGGSSRSRSSTTGVGQV-ISQLPAIKDNVKEVMFYC 997          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO1_ARATH (Protein argonaute OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.534e-29
Identity = 64/141 (45.39%), Postives = 85/141 (60.28%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSSSQGGMTSAGPV------------PVPQLPRLQEKVCNSMFFC 737
            N+ PGTVV +K+CHP  +DFYLC+HAG+ GTSRP HYHVL+DE  F++D LQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+ E     S + G M   G +             V  LP L+E V   MF+C
Sbjct:  908 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMAGRSTRGPNVNAAVRPLPALKENVKRVMFYC 1048          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO1A_ORYSJ (Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.285e-28
Identity = 65/143 (45.45%), Postives = 88/143 (61.54%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSSSQGGMTSAGPVPVP--------------QLPRLQEKVCNSMFFC 737
            N+ PGTVV +K+CHP  +DFYLC+HAG+ GTSRP HYHVL+DE  F++D LQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+  D S++ S   G  + G  P+P               LP L+E V   MF+C
Sbjct:  941 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME-PDTSDSGSMASGAHTRGGGPLPGARSTKPAGNVAVRPLPDLKENVKRVMFYC 1082          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO7_ORYSJ (Protein argonaute 7 OS=Oryza sativa subsp. japonica GN=AGO7 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 60/129 (46.51%), Postives = 82/129 (63.57%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 737
            N+PPGTVV   + HPR +DFYLC+H G  GTSRPTHYHVL+DE  F SDE+Q+L+H+L Y + R T  +S+V P  YAHLAA +   +++  D +        M    P+    LP+L++ V   MF+C
Sbjct:  928 NIPPGTVVDTVITHPREFDFYLCSHWGTKGTSRPTHYHVLWDENNFRSDEVQQLIHNLCYTFARCTRPVSLVPPAYYAHLAAYRGRLYLERSDTT--------MYRVSPLQTVPLPKLRDNVKRLMFYC 1048          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 65/143 (45.45%), Postives = 88/143 (61.54%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSSSQGGMTSAGPV--------------PVPQLPRLQEKVCNSMFFC 737
            N+ PGTVV +K+CHP  +DFYLC+HAG+ GTSRP HYHVL+DE  F++D LQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+  D S++SS   G    GP+               V  LP L++ V   MF+C
Sbjct:  870 NILPGTVVDSKICHPTEFDFYLCSHAGIKGTSRPAHYHVLWDENNFTADALQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME-PDTSDSSSVVSGPGVRGPLSGSSTSRTRAPGGAAVKPLPALKDSVKRVMFYC 1011          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO13_ORYSJ (Protein argonaute 13 OS=Oryza sativa subsp. japonica GN=AGO13 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.508e-24
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = -2
Query:  468 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMK 737
            N+ PGTV   ++CHP  + FYLC+HAG+ GTSRPTHYHVL+DE  F++DELQ L ++L Y+Y R T A+SVV P  Y+HLAAS     +K
Sbjct:  681 NILPGTVKDRQICHPTEFYFYLCSHAGIQGTSRPTHYHVLYDENHFTADELQTLTNNLCYIYARCTHAVSVVPPAYYSHLAASHAHCCIK 770          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO2_ORYSJ (Protein argonaute 2 OS=Oryza sativa subsp. japonica GN=AGO2 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.278e-24
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = -2
Query:  354 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSE------TSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFF 737
            NV PGTVV   V  P  YDFYLC+H G+IGTSRPTHY+ L DE GF+SD+LQ+LV++L +V+ R T  +S+  P+ YA LAA +   + +   +S+       S+S    + AG       P L E + ++MFF
Sbjct:  900 NVLPGTVVDTGVVDPAAYDFYLCSHNGLIGTSRPTHYYSLLDEHGFASDDLQKLVYNLCFVFARCTKPVSLATPVYYADLAAYRGRLYYEGMMMSQPPPSSAASASSASSSGAGASDFRSFPALHEDLVDNMFF 1033          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO2_XENTR (Protein argonaute-2 OS=Xenopus tropicalis GN=eif2c2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23
Identity = 54/130 (41.54%), Postives = 78/130 (60.00%), Query Frame = -2
Query:  354 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFM--KFEDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFF 737
            N+P GT V  K+ HP  +DFYLC+HAG+ GTSRP+HYHVL+D+  FSSDELQ L + L + Y R T ++S+ AP  YAHL A +    +  K  D +E S + G         + +  ++ +    +M+F
Sbjct:  741 NIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDQQALAKAVQVHQDTLRTMYF 870          
The following BLAST results are available for this feature:
BLAST of CN189792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PINH_ARATH2.589e-2946.97Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]
AGO1D_ORYSJ2.589e-2947.10Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]
AGOL_ARATH3.382e-2948.85Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
AGO1_ARATH7.534e-2945.39Protein argonaute OS=Arabidopsis thaliana GN=AGO1 ... [more]
AGO1A_ORYSJ1.285e-2845.45Protein argonaute 1A OS=Oryza sativa subsp. japoni... [more]
AGO7_ORYSJ2.863e-2846.51Protein argonaute 7 OS=Oryza sativa subsp. japonic... [more]
AGO1C_ORYSJ2.863e-2845.45Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
AGO13_ORYSJ2.508e-2456.67Protein argonaute 13 OS=Oryza sativa subsp. japoni... [more]
AGO2_ORYSJ4.278e-2444.03Protein argonaute 2 OS=Oryza sativa subsp. japonic... [more]
AGO2_XENTR2.123e-2341.54Protein argonaute-2 OS=Xenopus tropicalis GN=eif2c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189792 ID=CN189792; Name=CN189792; organism=Citrus sinensis; type=EST; length=741bp
TTTTTTTTTTTTTTTTTAAAACATGCCAATCATTCCAATTTCCGATACCC
GAATGCCTGAATCCATCAAAATAACAGTTTAACAGCCCATCGCTGTCTGG
GGAAATAGAGAGACTGGCGAATGCATGGGACTGGCAAGAGTCAACAACAC
CAGTAATCACCACAAAAACAAAGGCACAGGGCACTTTCGGTTTCTAGACC
TAAAATTAAATAGCAGAGATTTTCAAGGCATCACTACAAGTTCTAGACAC
CTTTGCCACTGGATGGTCCAGATGAAAACCAAAAGGCTAACTATATACAA
ACTACTTTGATAGGATTCTGATTGACGGTAGAAGCCACACAAGTGTCTCA
ACAGAAGAACATTGAATTGCACACTTTCTCCTGCAGTCTAGGCAGCTGGG
GGACAGGAACAGGTCCAGCAGATGTCATCCCACCCTGGCTAGAAGATGTC
TCTGATAAGTCTTCGAACTTCATGAATGATCCTACCTGGCTTGCTGCCAA
GTGGGCATAGCAAATTGGAGCAACTACAGAAATGGCTGTAGTGCTTCTCT
GGTACACATAAGAAAGTGAGTGCACTAGTTCCTGCAGCTCATCACTTGAA
AAGCCAATTTCATCAAATAGAACGTGGTAATGTGTTGGCCTTGAAGTACC
AATCATTCCAGCATGGGCACAAAGGTAGAAGTCATAGTTTCTTGGATGAC
AGACTTTGTTGGCAACAACAGTTCCAGGAGGAACATTGTCA
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