CN189766

Overview
NameCN189766
Unique NameCN189766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.363e-37
Identity = 94/211 (44.55%), Postives = 109/211 (51.66%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            RK  V GNWK N T  E   + + +  A                        L  S   + AQNC     GAFTGEVSA M+       VI GHSERR    E+N  V  KV +ALS GL+VI C GETLEQRE G T  VV  Q +     I +  N+V+AYEPVWAIGTGK AT  QA+EVH  +R  + D    E A   RI YGGSV
Sbjct:    2 RKKIVVGNWKMNKTVTESLVLAAEVTAALGEGFTGCDVGIAPPFTALYEVGKLTGSRLALVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSV 212          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPB (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.363e-37
Identity = 91/212 (42.92%), Postives = 114/212 (53.77%), Query Frame = 3
Query:   75 RKFFVGGNWKCN-GTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            RK  V GNWK N   +E V    S L   +                     + +  SD  + AQNC     GA+TGEVS  ML +L   ++I+GHSERR    E+N  V  ++  AL  G++VI C+GETLE+RE+G T A+V  Q +     I +  NVVLAYEPVWAIGTGK ATP QA  VHA +R  + D      A   RI YGGSV
Sbjct:    2 RKKIVVGNWKMNKNVAEGVALASSILENLDGGKMACEVGIAPAYPVLSEVGRVIEGSDICLVAQNCHYEDEGAYTGEVSVRMLDSLGCSYIIVGHSERRQYFGETNRTVNLRLKKALEGGMRVILCIGETLEEREAGVTDAIVTAQVREGLADIEDLGNVVLAYEPVWAIGTGKTATPEQADAVHASIRATISDMYGEADAEDIRIQYGGSV 213          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.363e-37
Identity = 88/212 (41.51%), Postives = 121/212 (57.08%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI-AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGS 704
            RK  V GNWK N   +E   +   LNEA                        ++ ++   V A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA  +E+ + + +KV  AL+  LK I C+GE LE+RE+     VVA Q  ++ +    ++  ++LAYEPVWAIGTGK AT  QAQE+HA +R  + D    EVA +T I+YGGS
Sbjct:    2 RKNIVAGNWKMNKNLQEGIALAKELNEALAADKPNCDVVICTPFIHLASVTPIVDKAVIGVGAENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGS 213          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.147e-37
Identity = 92/213 (43.19%), Postives = 118/213 (55.40%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            R+  V GNWK NG+      +++ + +AE                       L  S   + AQ+      GA+TGEVS  ML+  +  +VI+GHSERRA   E+N+ V  K   ALS GL  I CVGETLEQRE+G T  VV  Q  A+   I+  D   +V+AYEPVWAIGTGK ATP  AQEVH  LR+ L    +A+ A   RI+YGGS+
Sbjct:    2 RRKLVAGNWKMNGSLAANALLLAEI-KAEFGNPACDVAVCVPAPYLAQCLSLLSDSTIALGAQDVSSHDSGAYTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRRRLHAK-NAQAATEVRILYGGSM 212          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 88/215 (40.93%), Postives = 127/215 (59.07%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            M R   V GNWK NG     K +++ + +A                      +S +     + +QN   ++ GAFTGEVSA ML  +   +VI+GHSERRAL  E++  +  K A+A + GL  I CVGETLE+R+SG+T  +V  Q +A+ +   ++ + N ++AYEPVWAIGTGK A+P QAQ VHA LR++L  +   ++A S R++YGGSV
Sbjct:    1 MNRTPLVAGNWKMNGR----KDLLTEMADALAGYAGAAEVVICPPFPYLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQFLAKD-DPDIAQSLRLLYGGSV 210          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.038e-36
Identity = 88/213 (41.31%), Postives = 116/213 (54.46%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            R+  V GNWK N T   V+ +++ L +A                           +     AQ+C V   GAFTGE SA ML      + ++GHSERR +  ES++ V DK A     GL  + C+GETLEQ E+G T AVV  Q +A+  K  I++ +N V+ YEPVWAIGTGK ATP  AQE+ A +R WL +   A VA   +I+YGGSV
Sbjct:    2 RQALVMGNWKLNATKGSVEALINGLVDAAKDNATVEVAVCPPAVFIPQVEALTADTAITYGAQDCDVNTSGAFTGENSAVMLKEFGCKYTLVGHSERRVIHGESSEVVADKFAVTPENGLVPVLCIGETLEQFEAGETKAVVEAQLQAVVTKSGITSLNNAVIGYEPVWAIGTGKTATPEIAQEIPAHIRSWLAEQ-DAAVANKVQILYGGSV 213          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.038e-36
Identity = 94/217 (43.32%), Postives = 120/217 (55.30%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            R+  V GNWK NG+       + +I S L  A                       ++      + AQ+    + GA+TGEVS  ML      +VI+GHSERRA   E+N+ +  K   AL+ GL  I CVGETL+QRE+G T +VVAEQ   +   I+  D   +V+AYEPVWAIGTGK ATPA AQEVHA LRK L    +AE A   RI+YGGS+
Sbjct:    2 RRKLVAGNWKMNGSLAANTLLLTEIKSGLGNATSDVAVCVPSPYFAQCQGLLNGAAIA-----LGAQDVSSHEAGAYTGEVSTSMLQEFDCRYVIVGHSERRAYFAETNELIAQKTVRALNAGLTPIVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRKQLQAK-NAEAAMQVRILYGGSM 212          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 87/214 (40.65%), Postives = 123/214 (57.48%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKG-GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            R+  V GNWK NGT   V +++ +    +                       +      V AQ+C ++ G GA TGEVSA+ LV+L   WV++GHSERR +L E+++ V  K A A + GLK + C+GETLE+RE+G T+ VVA Q   + +   +  + + V+AYEPVWAIG+G  ATP QAQEVHA +R  L  +    +A   R++YGGSV
Sbjct:    2 RRPMVAGNWKMNGTRASVAELIESFRR-QALPAAVEIAVFPSFVHVSQVLDVVDGVQVSVGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRDQLARS-DRRIAEGVRLLYGGSV 213          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 90/215 (41.86%), Postives = 120/215 (55.81%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEA-EXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVN 710
            RK  V GNWK N T +E   +   L+ A +                      ++  +   VAA+NC  ++ GA+TGEVSA M+ +    +VI+GHSERRA  +E++  + +KV  ALS GL  I CVGE LE+RE+G    VVA Q +     +   D   ++LAYEPVWAIGTGK AT  QAQE+HA +RK +      EVA    I+YGGS N
Sbjct:    2 RKNIVAGNWKMNKTLQEGLALAKELDAALKGRTINCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCN 216          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 90/215 (41.86%), Postives = 120/215 (55.81%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEA-EXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVN 710
            RK  V GNWK N T +E   +   L+ A +                      ++  +   VAA+NC  ++ GA+TGEVSA M+ +    +VI+GHSERRA  +E++  + +KV  ALS GL  I CVGE LE+RE+G    VVA Q +     +   D   ++LAYEPVWAIGTGK AT  QAQE+HA +RK +      EVA    I+YGGS N
Sbjct:    2 RKNIVAGNWKMNKTLQEGLALAKELDAALKGRTISCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCN 216          
The following BLAST results are available for this feature:
BLAST of CN189766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLPD5.363e-3744.55Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_CHLPB5.363e-3742.92Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_BACV85.363e-3741.51Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_HERAR9.147e-3743.19Triosephosphate isomerase OS=Herminiimonas arsenic... [more]
TPIS_ALCBS1.195e-3640.93Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_VIBSA2.038e-3641.31Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]
TPIS_JANMA2.038e-3643.32Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_PSEU52.661e-3640.65Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_PORGI2.661e-3641.86Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG32.661e-3641.86Triosephosphate isomerase OS=Porphyromonas gingiva... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G05_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189766 ID=CN189766; Name=CN189766; organism=Citrus sinensis; type=EST; length=715bp
GAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAA
CAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTG
GAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGA
ATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCT
CCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCA
TGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGG
AAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGG
AGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTG
TTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTG
GCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGT
TGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAA
CCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTANA
GACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGG
TTCTGTAAATGGAGC
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