CN189766

Overview
NameCN189766
Unique NameCN189766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_ALKOO (Triosephosphate isomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 83/213 (38.97%), Postives = 121/213 (56.81%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            RK  + GNWK N  S+E   +V+ + + E                     K+L+ ++  + AQN    + GA+TGE+SA ML ++ + +VILGHSERR   NE+++ V  KV  A+   LK I C+GE+LE+RE+  T  V+ +Q     E +     DNVVLAYEP+WAIGTGK A+  +AQ V A +R  + +    +++   RI YGGSV
Sbjct:    2 RKPIIAGNWKMNKVSKEALDLVNQIKD-EVHKTEVEVVVCCPFTVLSQVQKALVGTNLKLGAQNMHWEEDGAYTGEISANMLKDIGVEYVILGHSERRQYFNETDETVNKKVKKAIKENLKPIVCIGESLEEREANQTFDVIKKQLLGAFEGVPAEAMDNVVLAYEPIWAIGTGKTASSEEAQTVIAYIRSLIEEKYGVDISEEVRIQYGGSV 213          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_FUSNN (Triosephosphate isomerase OS=Fusobacterium nucleatum subsp. nucleatum GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.744e-36
Identity = 83/213 (38.97%), Postives = 118/213 (55.40%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            R+  + GNWK    ++E  + ++ L +                       K +  S+  +AA+N + +  GA+TGEVS +ML ++ + +VILGHSERR    ES++F+  KV   L  G+K I C+GE LE RE G T+ V+A+Q K     +S  D    ++AYEPVWAIGTGK ATP  AQE H E+R  L +    +VA    I YGGS+
Sbjct:    2 RRLVIAGNWKMYKNNKEAVETLTQLKDLTRDVKNVDIVIGAPFTCLSDAVKIVEGSNVKIAAENVYPKIEGAYTGEVSPKMLKDIGVTYVILGHSERREYFKESDEFINQKVKAVLEIGMKPILCIGEKLEDREGGKTLEVLAKQIKEGLVDLSKEDAEKTIVAYEPVWAIGTGKTATPEMAQETHKEIRNVLAEMFGKDVADKMIIQYGGSM 214          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_RHOBA (Triosephosphate isomerase OS=Rhodopirellula baltica GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.011e-35
Identity = 86/215 (40.00%), Postives = 121/215 (56.28%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            M+R+  + GNWK N  +E    +   + +A                       +++ +   + AQN +  + GAFTGEV+A ML ++   +VILGHSERR L+ E++  V  K+  AL+  L  I CVGETLEQRE+  T +V+  Q +   E +  +   N+V+AYEPVWAIGTGK A+  QA+ VHA +R+ L    S EVA   RI YGGSV
Sbjct:    1 MSRRILIAGNWKMNMRAESGASLAKGIVDAVGKSPAVEVVLCPPSVYLSGVADAVVGTPVELGAQNLYAAEDGAFTGEVNASMLTDVGCRFVILGHSERRQLMGETDACVAKKLHAALAGNLVPIVCVGETLEQREADDTESVIETQIRGSLEGLDEARAANIVIAYEPVWAIGTGKTASKEQAEAVHAFIRELLGKMFSTEVAEQIRIQYGGSV 215          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.321e-35
Identity = 82/213 (38.50%), Postives = 121/213 (56.81%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            RK  V GNWK +  + + +++++ L                           L  +   V+AQN    +GGAFTGE+SA+ML ++ +  VILGHSERRA+ +E++  + +KV  AL   + VI C GE L+ R+SG+   +V  Q +     I+  +W  +VLAYEPVWAIGTG+ A+P QAQE+H  +R+ +     AE+A    I+YGGSV
Sbjct:    2 RKSIVAGNWKMHKNAAQTEELLNELIAKIPAKTNAQVIVAPTFVNLQAAAAKLKNTTIGVSAQNVHQAEGGAFTGEISADMLTSIGVNTVILGHSERRAIFHETDALIANKVDTALKHDMTVIFCFGEELKDRQSGNHFNIVENQLRDGVFHIAKESWSKIVLAYEPVWAIGTGETASPEQAQEMHEFIRETIRKAFGAEIADEVSILYGGSV 214          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_COXBU (Triosephosphate isomerase OS=Coxiella burnetii GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.321e-35
Identity = 87/216 (40.28%), Postives = 126/216 (58.33%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIA---EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            M R+  V GNWK +G+ E V +++  L                         ++L+R+     AQ+    + GA+TGEVSA ML +    +VI+GHSERR    E+N+ V  KV  AL  G++ I CVGET +QR +  T++V+ EQ   +    + +++ + +V+AYEP+WAIGTGK ATP+QA+EVHA LR  L     A +A STR++YGGSV
Sbjct:    1 MQRRPLVAGNWKMHGSRESVGQLLRALKHGCERLETAELAVFPPFVFLQQCEEALMRTQISWGAQDVSEFERGAYTGEVSAAMLRDFHCRYVIVGHSERRQRHGETNEQVAAKVRAALRCGIRPIICVGETEKQRNANQTLSVIKEQLAVVLQMNDNLASLEGMVVAYEPIWAIGTGKNATPSQAEEVHAALRDQL-HRQDATLAESTRLLYGGSV 215          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_COXBR (Triosephosphate isomerase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.321e-35
Identity = 87/216 (40.28%), Postives = 126/216 (58.33%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIA---EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            M R+  V GNWK +G+ E V +++  L                         ++L+R+     AQ+    + GA+TGEVSA ML +    +VI+GHSERR    E+N+ V  KV  AL  G++ I CVGET +QR +  T++V+ EQ   +    + +++ + +V+AYEP+WAIGTGK ATP+QA+EVHA LR  L     A +A STR++YGGSV
Sbjct:    1 MQRRPLVAGNWKMHGSRESVGQLLRALKHGCERLETAELAVFPPFVFLQQCEEALMRTQISWGAQDVSEFERGAYTGEVSAAMLRDFHCRYVIVGHSERRQRHGETNEQVAAKVRAALRCGIRPIICVGETEKQRNANQTLSVIKEQLAVVLQMNDNLASLEGMVVAYEPIWAIGTGKNATPSQAEEVHAALRDQL-HRQDATLAESTRLLYGGSV 215          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_COXBN (Triosephosphate isomerase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.321e-35
Identity = 87/216 (40.28%), Postives = 126/216 (58.33%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIA---EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            M R+  V GNWK +G+ E V +++  L                         ++L+R+     AQ+    + GA+TGEVSA ML +    +VI+GHSERR    E+N+ V  KV  AL  G++ I CVGET +QR +  T++V+ EQ   +    + +++ + +V+AYEP+WAIGTGK ATP+QA+EVHA LR  L     A +A STR++YGGSV
Sbjct:    1 MQRRPLVAGNWKMHGSRESVGQLLRALKHGCERLETAELAVFPPFVFLQQCEEALMRTQISWGAQDVSEFERGAYTGEVSAAMLRDFHCRYVIVGHSERRQRHGETNEQVAAKVRAALRCGIRPIICVGETEKQRNANQTLSVIKEQLAVVLQMNDNLASLEGMVVAYEPIWAIGTGKNATPSQAEEVHAALRDQL-HRQDATLAESTRLLYGGSV 215          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_THICR (Triosephosphate isomerase OS=Thiomicrospira crunogena (strain XCL-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.725e-35
Identity = 88/214 (41.12%), Postives = 120/214 (56.07%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRK-GGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            R+ FV GNWK +G    +K +V+ LN                          L+  +  +  QN  +    GA+TGE SA ML ++   +VILGHSERRA+  E++  +  KV  AL  GL  I CVGETLE+RESG   +V+++Q  A+  +  I  + +VV+AYEPVWAIGTGK A+  QAQ+VHA +R  L   ++  VA    I YGGSV
Sbjct:    2 RQLFVAGNWKMHGDKASIKTLVTGLNAKADSVGDVLVAVCPPAIYLDYTKNCLMAGEIALGGQNMAIEPVQGAYTGETSASMLKDVGCQYVILGHSERRAIYGETDQDIAAKVKTALDSGLTPILCVGETLEERESGQLESVISQQLDAVISEVGIDQFADVVIAYEPVWAIGTGKTASAQQAQDVHAFIRGQLA-KLNPSVAEKVIIQYGGSV 214          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.725e-35
Identity = 89/219 (40.64%), Postives = 124/219 (56.62%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXK---SLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVN 710
            M R+  V  NWK NG S  V  +VS L + E                     K   + L    HV +QN    + GA+TGEVS  ML NL+I +VI+GHSERR++  E++  V  KV  AL+ GL  I C+GE+  +R +G T  V++ Q + + ++  I  + +VV+AYEPVWAIGTGK A+ A AQE H  +RK+L    + +VA    ++YGGSVN
Sbjct:    1 MTRQAIVAANWKMNGDSALVDTMVSGLADIELSSHVDVVICPSFPYLSELNQKIKAANLNEAIHVGSQNVSEHESGAYTGEVSTAMLQNLAINYVIVGHSERRSIFKETSTQVAKKVHAALNAGLTPILCIGESEAERATGETETVLSAQIQPVIDEIGIEKFKDVVIAYEPVWAIGTGKTASSAMAQETHQFIRKFLAQQ-NEQVADKVPLLYGGSVN 218          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.253e-35
Identity = 85/211 (40.28%), Postives = 117/211 (55.45%), Query Frame = 3
Query:   75 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            RK  + GNWK NG+ E  K ++  +  A+                      ++  S   + +QNC   + GA+TGEVSA+M  ++   WVILGHSERRAL  E+++ +  KV  A+  GL  I CVGETL  RESG    V  +Q  A+   +   D+ V+AYEPVWAIGTGK A+P  AQ +H  LR  +  +   ++A   RI+YGGSV
Sbjct:    2 RKKLIAGNWKSNGSLERNKALLEGIVNAKALGSVDVVVCPPFPYLQSVE-SAVSDSMIELGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGETLADRESGRAEEVTLKQLDAVFMSVQPDDSWVVAYEPVWAIGTGKTASPEDAQSMHKALRNNIRKHF-PQIADKIRILYGGSV 210          
The following BLAST results are available for this feature:
BLAST of CN189766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ALKOO4.540e-3638.97Triosephosphate isomerase OS=Alkaliphilus oremland... [more]
TPIS_FUSNN7.744e-3638.97Triosephosphate isomerase OS=Fusobacterium nucleat... [more]
TPIS_RHOBA1.011e-3540.00Triosephosphate isomerase OS=Rhodopirellula baltic... [more]
TPIS_FLAJ11.321e-3538.50Triosephosphate isomerase OS=Flavobacterium johnso... [more]
TPIS_COXBU1.321e-3540.28Triosephosphate isomerase OS=Coxiella burnetii GN=... [more]
TPIS_COXBR1.321e-3540.28Triosephosphate isomerase OS=Coxiella burnetii (st... [more]
TPIS_COXBN1.321e-3540.28Triosephosphate isomerase OS=Coxiella burnetii (st... [more]
TPIS_THICR1.725e-3541.12Triosephosphate isomerase OS=Thiomicrospira crunog... [more]
TPIS_COLP31.725e-3540.64Triosephosphate isomerase OS=Colwellia psychreryth... [more]
TPIS_HAHCH2.253e-3540.28Triosephosphate isomerase OS=Hahella chejuensis (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G05_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189766 ID=CN189766; Name=CN189766; organism=Citrus sinensis; type=EST; length=715bp
GAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAA
CAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTG
GAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGA
ATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCT
CCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCA
TGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGG
AAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGG
AGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTG
TTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTG
GCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGT
TGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAA
CCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTANA
GACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGG
TTCTGTAAATGGAGC
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