DR908865

Overview
NameDR908865
Unique NameDR908865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: SMUF1_MOUSE (E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus GN=Smurf1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.360e-17
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQG---ISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHE 221
            ARLLQFVTG+++VPL+GFKALQG    +GP+ F IH      + LP AHTCFN++D+P Y S E+L E+LL A+ E
Sbjct:  649 ARLLQFVTGSTRVPLQGFKALQGSTGAAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAVEE 724          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: SMUF1_HUMAN (E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens GN=SMURF1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.360e-17
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQG---ISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHE 221
            ARLLQFVTG+++VPL+GFKALQG    +GP+ F IH      + LP AHTCFN++D+P Y S E+L E+LL A+ E
Sbjct:  675 ARLLQFVTGSTRVPLQGFKALQGSTGAAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAVEE 750          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.026e-17
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 3
Query:    6 RLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 239
            RLLQFVTGT ++P+ GF  L G +GPQKF I +  G    LP +HTCFN+LDLP Y S EQL+E+LL AI E +EGFG
Sbjct:  793 RLLQFVTGTCRLPVGGFAELIGSNGPQKFCIDRV-GKETWLPRSHTCFNRLDLPPYKSYEQLKEKLLYAIEE-TEGFG 868          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: SUDX_DROME (E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster GN=Su(dx) PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.530e-16
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGF 236
            ARLLQFVTGT +VP+ GF  L G +GPQ+F I K  G    LP +HTCFN+LDLP Y S +QL E+L  AI E +EGF
Sbjct:  871 ARLLQFVTGTCRVPVGGFAELMGSNGPQRFCIEKV-GKETWLPRSHTCFNRLDLPPYKSYDQLVEKLTFAIEE-TEGF 946          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: HECW2_MOUSE (E3 ubiquitin-protein ligase HECW2 OS=Mus musculus GN=Hecw2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 3
Query:    6 RLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEAS 227
            RLLQFVTGTS +P EGF +L+G +GP++F + K +G    LP AHTCFN+LDLP Y S   L E+LL A+ E S
Sbjct: 1501 RLLQFVTGTSSIPYEGFASLRGSNGPRRFCVEK-WGKITALPRAHTCFNRLDLPPYPSFSMLYEKLLTAVEETS 1573          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: HECW2_HUMAN (E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens GN=HECW2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 3
Query:    6 RLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEAS 227
            RLLQFVTGTS +P EGF +L+G +GP++F + K +G    LP AHTCFN+LDLP Y S   L E+LL A+ E S
Sbjct: 1495 RLLQFVTGTSSIPYEGFASLRGSNGPRRFCVEK-WGKITALPRAHTCFNRLDLPPYPSFSMLYEKLLTAVEETS 1567          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: HECW1_MOUSE (E3 ubiquitin-protein ligase HECW1 OS=Mus musculus GN=Hecw1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.813e-16
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    6 RLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEAS 227
            RLLQFVTGTS VP EGF AL+G +G ++F I K +G    LP AHTCFN+LDLP Y S   L E+LL A+ E S
Sbjct: 1527 RLLQFVTGTSSVPYEGFAALRGSNGLRRFCIEK-WGKITSLPRAHTCFNRLDLPPYPSYSMLYEKLLTAVEETS 1599          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: HECW1_HUMAN (E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens GN=HECW1 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 5.813e-16
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    6 RLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEAS 227
            RLLQFVTGTS VP EGF AL+G +G ++F I K +G    LP AHTCFN+LDLP Y S   L E+LL A+ E S
Sbjct: 1529 RLLQFVTGTSSVPYEGFAALRGSNGLRRFCIEK-WGKITSLPRAHTCFNRLDLPPYPSYSMLYEKLLTAVEETS 1601          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: SMUF1_DROME (E3 ubiquitin-protein ligase Smurf1 OS=Drosophila melanogaster GN=lack PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 4.921e-15
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGIS---GPQKFQIHKAYGAP-ERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHE 221
            ARLLQFVTG+S+VPL+GF+ALQG +   GP+ F IH     P + LP AHTCFN++DLP Y + + L ++L  A+ E
Sbjct:  978 ARLLQFVTGSSRVPLQGFRALQGSTGAVGPRLFTIHLTADVPTQNLPKAHTCFNRIDLPPYETYQLLCDKLTQAVEE 1054          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: HACE1_XENTR (E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.106e-14
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    9 LLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGF 236
            LLQFVTG+S+VP  GF  + G SG Q F I      P  LP++ TC N L LPEY SKE L++RLL+A+H  S G+
Sbjct:  834 LLQFVTGSSRVPHGGFAYIMGGSGLQNFTIAAVAYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGY 909          
The following BLAST results are available for this feature:
BLAST of DR908865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SMUF1_MOUSE2.360e-1756.58E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus... [more]
SMUF1_HUMAN2.360e-1756.58E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens... [more]
WWP2_MOUSE4.026e-1760.26NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]
SUDX_DROME1.530e-1658.97E3 ubiquitin-protein ligase Su(dx) OS=Drosophila m... [more]
HECW2_MOUSE1.998e-1656.76E3 ubiquitin-protein ligase HECW2 OS=Mus musculus ... [more]
HECW2_HUMAN1.998e-1656.76E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens ... [more]
HECW1_MOUSE5.813e-1659.46E3 ubiquitin-protein ligase HECW1 OS=Mus musculus ... [more]
HECW1_HUMAN5.813e-1659.46E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens ... [more]
SMUF1_DROME4.921e-1553.25E3 ubiquitin-protein ligase Smurf1 OS=Drosophila m... [more]
HACE1_XENTR7.106e-1452.63E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16993 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-21_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908865 ID=DR908865; Name=DR908865; organism=Citrus sinensis; type=EST; length=570bp
TGGCTAGACTGCTTCAATTTGTCACTGGAACTTCAAAGGTTCCACTGGAG
GGTTTCAAGGCATTGCAGGGTATCTCTGGTCCCCAGAAGTTCCAGATTCA
CAAGGCATATGGAGCCCCTGAGCGGCTGCCTTCGGCTCATACATGCTTCA
ATCAACTAGATCTTCCTGAGTATTCGTCCAAGGAACAGCTTCAAGAGCGC
TTGTTGCTTGCTATACATGAAGCCAGTGAAGGTTTTGGCTTTGGTTAAAT
ATTCTTTTACGTCAGTGTTGCGCCAGCAGCACCAGCCGTCAGACTCCACA
TTTCCATGTACATAAGCCAACTGATTCAGGTAGATAGAAATATCGATAAG
TTGGGGGACAAGCCGCAAATCATTGTCAAAATCAGATTGTAGAGGGATTC
CTGGAAGTATCTCGGCATAACCGCAATGGTAGTTATGCTTTGATCAAAGT
GGTGGGGTGGGAAGCTCTTCATTATTCATGTTGAGCTGGGAATTTTTTTT
CTCTGGCTTATTTAAAGCCCAATGGATTCAAAAGTGGGTATAGAATGTTG
ATGGATGATGGTATCATTGT
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